Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173477785..173479364-chr1:173506980..173508518,2	K562	blood:
2	chr1:173446072..173448029-chr1:173478840..173480491,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117592	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10732994	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10737302	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846025	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846029	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846125	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846129	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846173	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846204	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35581908	1.00[AMR][1000 genomes]
rs4342885	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs4354572	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs4567310	1.00[AMR][1000 genomes]
rs4636504	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs56043618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56236728	0.87[AMR][1000 genomes]
rs59041016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60055251	0.87[AMR][1000 genomes]
rs60769229	0.87[AMR][1000 genomes]
rs6425234	0.94[YRI][hapmap]
rs6663036	0.87[AMR][1000 genomes]
rs7513591	1.00[AMR][1000 genomes]
rs7513763	1.00[AMR][1000 genomes]
rs9425410	1.00[AMR][1000 genomes]
rs9425722	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs9425725	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs9425727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173476800-173479200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:173477200-173479000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173478600-173479600	Enhancers	Fetal Intestine Large	intestine

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