Variant report

Variant	rs16846099
Chromosome Location	chr1:173490806-173490807
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173490173..173492783-chr1:173495928..173498517,3	K562	blood:
2	chr1:173490173..173491820-chr1:173495928..173498517,2	K562	blood:
3	chr1:173485631..173487913-chr1:173488725..173492186,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10732994	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10737302	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846025	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846029	0.83[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846055	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846125	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846129	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846173	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846204	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35581908	1.00[AMR][1000 genomes]
rs4342885	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs4354572	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs4567310	1.00[AMR][1000 genomes]
rs4636504	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs56043618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56236728	0.87[AMR][1000 genomes]
rs59041016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60055251	0.87[AMR][1000 genomes]
rs60769229	0.87[AMR][1000 genomes]
rs6425234	0.94[YRI][hapmap]
rs6663036	0.87[AMR][1000 genomes]
rs7513591	1.00[AMR][1000 genomes]
rs7513763	1.00[AMR][1000 genomes]
rs9425410	1.00[AMR][1000 genomes]
rs9425722	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs9425725	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs9425727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173488400-173495200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:173488400-173496000	Weak transcription	Right Atrium	heart
3	chr1:173488400-173496800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:173490200-173493000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:173490600-173491800	Weak transcription	Liver	Liver
6	chr1:173490800-173491000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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