The 2.0 version of rSNPBase

Variant report

Variant rs6425234
Chromosome Location chr1:173413496-173413497
allele C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173376200-173429000 Weak transcription Gastric stomach
2 chr1:173387600-173429000 Weak transcription Lung lung
3 chr1:173391800-173429000 Weak transcription Ovary ovary
4 chr1:173399400-173414400 Weak transcription Spleen Spleen
5 chr1:173399400-173424200 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:173399800-173413800 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:173399800-173415400 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr1:173399800-173415600 Weak transcription Liver Liver
9 chr1:173400200-173421000 Weak transcription Psoas Muscle Psoas
10 chr1:173400200-173422800 Weak transcription NH-A brain
11 chr1:173400400-173429000 Weak transcription Monocytes-CD14+_RO01746 blood
12 chr1:173400600-173413600 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr1:173400600-173413800 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr1:173400600-173428800 Weak transcription Fetal Stomach stomach
15 chr1:173400800-173413800 Weak transcription Primary B cells from peripheral blood blood
16 chr1:173400800-173413800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr1:173400800-173413800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr1:173400800-173413800 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr1:173400800-173414000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr1:173400800-173414200 Weak transcription Fetal Muscle Trunk muscle
21 chr1:173400800-173420600 Weak transcription Hela-S3 cervix
22 chr1:173400800-173421000 Weak transcription Colon Smooth Muscle Colon
23 chr1:173400800-173422800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:173400800-173429000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr1:173400800-173429000 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr1:173401000-173415600 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr1:173401000-173418000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr1:173401000-173421000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:173401000-173421000 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr1:173401000-173422800 Weak transcription Muscle Satellite Cultured Cells --
31 chr1:173401000-173428800 Weak transcription Brain Hippocampus Middle brain
32 chr1:173401000-173429000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:173401000-173429000 Weak transcription Left Ventricle heart
34 chr1:173401200-173422800 Weak transcription HSMM muscle
35 chr1:173401800-173429000 Weak transcription Primary B cells from cord blood blood
36 chr1:173404200-173429000 Weak transcription Adipose Nuclei Adipose
37 chr1:173404200-173429000 Weak transcription Right Ventricle heart
38 chr1:173404400-173423000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:173408600-173414000 Weak transcription HepG2 liver
40 chr1:173408800-173415000 Weak transcription Brain Inferior Temporal Lobe brain
41 chr1:173408800-173415400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr1:173408800-173422800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr1:173408800-173422800 Weak transcription HSMMtube muscle
44 chr1:173408800-173422800 Weak transcription K562 blood
45 chr1:173408800-173429000 Weak transcription Brain Substantia Nigra brain
46 chr1:173408800-173429000 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:173409000-173415600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
48 chr1:173409000-173428800 Weak transcription Primary monocytes fromperipheralblood blood
49 chr1:173409000-173428800 Weak transcription Primary T regulatory cells fromperipheralblood blood
50 chr1:173409000-173429200 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015