Variant report

Variant	rs16846125
Chromosome Location	chr1:173497712-173497713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173490173..173492783-chr1:173495928..173498517,3	K562	blood:
2	chr1:173496870..173499125-chr1:173501747..173503656,2	K562	blood:
3	chr1:173496493..173499619-chr1:173501510..173504618,3	K562	blood:
4	chr1:173496848..173499075-chr1:173504402..173505965,2	MCF-7	breast:
5	chr1:173459417..173461304-chr1:173495286..173497906,2	K562	blood:
6	chr1:173490173..173491820-chr1:173495928..173498517,2	K562	blood:
7	chr1:173496692..173499395-chr1:173502096..173503958,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10157668	1.00[GIH][hapmap]
rs10158034	1.00[GIH][hapmap]
rs10732994	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs10737302	0.87[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs12059068	1.00[GIH][hapmap]
rs12065033	1.00[GIH][hapmap]
rs12081220	1.00[GIH][hapmap]
rs12087885	1.00[GIH][hapmap]
rs16828416	1.00[GIH][hapmap]
rs16846025	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846029	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846052	1.00[GIH][hapmap]
rs16846055	0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846090	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846099	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846103	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846122	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846173	1.00[ASW][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846204	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846220	1.00[GIH][hapmap]
rs16846301	1.00[GIH][hapmap]
rs2013387	1.00[GIH][hapmap]
rs35581908	1.00[AMR][1000 genomes]
rs4342885	0.86[ASW][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4354572	0.87[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[AMR][1000 genomes]
rs4494170	1.00[GIH][hapmap];0.86[MKK][hapmap]
rs4567310	1.00[AMR][1000 genomes]
rs4636504	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs4916221	1.00[GIH][hapmap]
rs56043618	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56236728	0.87[AMR][1000 genomes]
rs59041016	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60055251	0.87[AMR][1000 genomes]
rs60769229	0.87[AMR][1000 genomes]
rs6425234	0.88[YRI][hapmap]
rs6663036	0.87[AMR][1000 genomes]
rs6678784	1.00[GIH][hapmap]
rs7513591	1.00[AMR][1000 genomes]
rs7513763	1.00[AMR][1000 genomes]
rs9425410	1.00[AMR][1000 genomes]
rs9425722	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs9425725	1.00[AMR][1000 genomes]
rs9425727	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173494800-173497800	Enhancers	Hela-S3	cervix
2	chr1:173495000-173500200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173496400-173497800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:173496400-173498400	Weak transcription	K562	blood
5	chr1:173496400-173498800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:173496400-173501200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:173496400-173501800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:173496600-173498800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:173496600-173499000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:173496800-173498000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:173496800-173498200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:173496800-173499200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:173496800-173499200	Weak transcription	Placenta	Placenta
14	chr1:173496800-173500400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:173496800-173501200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:173496800-173501600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:173497000-173500400	Weak transcription	Adipose Nuclei	Adipose
18	chr1:173497200-173498000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr1:173497200-173499400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr1:173497200-173500400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:173497400-173498400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr1:173497400-173498600	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr1:173497400-173500400	Weak transcription	Brain Substantia Nigra	brain
24	chr1:173497600-173498800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:173497600-173499000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr1:173497600-173500400	Weak transcription	H1 Cell Line	embryonic stem cell

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