Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173477785..173479364-chr1:173506980..173508518,2	K562	blood:
2	chr1:173446072..173448029-chr1:173478840..173480491,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117592	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10157668	1.00[GIH][hapmap]
rs10158034	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs10737302	1.00[GIH][hapmap]
rs10737303	0.88[AFR][1000 genomes]
rs10912627	0.85[MEX][hapmap]
rs10912628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912631	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059068	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs12060658	0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12065033	1.00[GIH][hapmap]
rs12081220	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs12087885	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs12164630	1.00[EUR][1000 genomes]
rs1461021	1.00[EUR][1000 genomes]
rs16828416	1.00[GIH][hapmap]
rs16846173	1.00[GIH][hapmap]
rs16846220	1.00[GIH][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes]
rs16846301	1.00[GIH][hapmap]
rs2013387	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs4354572	1.00[GIH][hapmap]
rs4456125	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4494170	1.00[GIH][hapmap]
rs4564180	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4916221	1.00[GIH][hapmap]
rs6425240	1.00[EUR][1000 genomes]
rs6425247	0.89[AMR][1000 genomes]
rs6678784	1.00[GIH][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173476800-173479200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:173477200-173479000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173478600-173479600	Enhancers	Fetal Intestine Large	intestine

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