Variant report

Variant	rs4564180
Chromosome Location	chr1:173477482-173477483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10737303	0.91[AFR][1000 genomes]
rs10912628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912631	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060658	1.00[EUR][1000 genomes]
rs12164630	1.00[EUR][1000 genomes]
rs1461021	1.00[EUR][1000 genomes]
rs16846052	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846220	0.89[AMR][1000 genomes]
rs4456125	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6425240	1.00[EUR][1000 genomes]
rs6425247	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173474800-173478400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:173475400-173477800	Enhancers	Stomach Smooth Muscle	stomach
3	chr1:173475400-173477800	Enhancers	HSMMtube	muscle
4	chr1:173475600-173478400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:173476400-173478200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:173476800-173477800	Enhancers	Rectal Smooth Muscle	rectum
7	chr1:173476800-173479200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:173477000-173478000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:173477000-173478000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:173477000-173478600	Weak transcription	Fetal Intestine Large	intestine
11	chr1:173477200-173478000	Enhancers	A549	lung
12	chr1:173477200-173478200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:173477200-173478400	Enhancers	Hela-S3	cervix
14	chr1:173477200-173479000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:173477400-173478200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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