Variant report

Variant	rs6678784
Chromosome Location	chr1:173574871-173574872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173539762..173541547-chr1:173573962..173575508,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10127525	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10157668	1.00[GIH][hapmap]
rs10158034	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10737302	1.00[GIH][hapmap]
rs10798290	0.81[YRI][hapmap]
rs10912652	1.00[EUR][1000 genomes]
rs10912653	1.00[EUR][1000 genomes]
rs10912654	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912655	1.00[EUR][1000 genomes]
rs10912657	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912658	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912659	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11484566	1.00[EUR][1000 genomes]
rs12058218	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12059066	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059068	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059157	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12065033	1.00[ASW][hapmap];1.00[GIH][hapmap];0.82[AMR][1000 genomes]
rs12066066	1.00[EUR][1000 genomes]
rs12066494	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067795	1.00[EUR][1000 genomes]
rs12068135	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073601	0.82[MEX][hapmap]
rs12074044	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12074150	0.82[AMR][1000 genomes]
rs12075335	0.95[AMR][1000 genomes]
rs12075679	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081220	1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083635	0.95[AMR][1000 genomes]
rs12084685	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087885	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087918	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089398	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12091486	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093198	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094752	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096136	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164630	0.84[AMR][1000 genomes]
rs13375322	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461016	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461017	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828416	1.00[GIH][hapmap]
rs16846052	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs16846173	1.00[GIH][hapmap]
rs16846220	1.00[GIH][hapmap]
rs16846278	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16846288	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846301	1.00[GIH][hapmap]
rs1903410	0.95[AMR][1000 genomes]
rs1903411	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2013387	0.88[ASW][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28767926	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4354572	1.00[GIH][hapmap]
rs4494170	1.00[GIH][hapmap]
rs4916221	1.00[GIH][hapmap]
rs56036053	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56157228	0.89[AMR][1000 genomes]
rs57609710	1.00[EUR][1000 genomes]
rs58045923	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59054917	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61554547	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6425250	1.00[EUR][1000 genomes]
rs6425251	0.88[ASW][hapmap]
rs6666475	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670574	0.82[AMR][1000 genomes]
rs6675955	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677292	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6686370	1.00[EUR][1000 genomes]
rs6690869	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6700712	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73033123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033131	0.95[AMR][1000 genomes]
rs7518601	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537369	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9803675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803677	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173573000-173577600	Weak transcription	Right Atrium	heart
2	chr1:173573400-173586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:173574000-173577600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links