Variant report

Variant	rs10798290
Chromosome Location	chr1:173557584-173557585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173555448..173558031-chr1:173683873..173685829,2	MCF-7	breast:
2	chr1:173554073..173555924-chr1:173556865..173558651,2	MCF-7	breast:
3	chr1:173555092..173557782-chr1:173564297..173566456,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000076321	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10158034	0.81[YRI][hapmap]
rs10737301	0.80[CHB][hapmap]
rs10798291	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798292	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912624	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs10912626	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs10912641	0.87[CEU][hapmap]
rs10912643	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs10912651	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10912670	0.81[CHB][hapmap]
rs10912671	0.90[CHB][hapmap]
rs11582670	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12026427	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs12026677	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs12032386	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037210	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs12039524	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12059068	0.81[YRI][hapmap]
rs12065426	0.80[CHB][hapmap]
rs12082131	0.90[CHB][hapmap]
rs12087885	0.81[YRI][hapmap]
rs12561820	0.85[ASN][1000 genomes]
rs12568477	0.82[ASN][1000 genomes]
rs12744504	0.81[CHB][hapmap]
rs1461014	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs1886639	0.87[CEU][hapmap];0.80[CHB][hapmap]
rs2273366	0.90[CHB][hapmap]
rs2901747	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901748	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34754266	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3934575	0.80[CHB][hapmap]
rs3934576	0.80[CHB][hapmap]
rs4244195	0.80[CHB][hapmap]
rs4294450	0.80[CHB][hapmap]
rs4539167	0.81[CHB][hapmap]
rs61826760	0.81[ASN][1000 genomes]
rs61826766	0.81[ASN][1000 genomes]
rs61828914	0.80[ASN][1000 genomes]
rs61828922	0.82[ASN][1000 genomes]
rs61828923	0.82[ASN][1000 genomes]
rs6413827	0.90[CHB][hapmap]
rs6425251	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425258	0.90[CHB][hapmap]
rs6660804	0.80[CHB][hapmap]
rs6674589	0.80[ASN][1000 genomes]
rs6678784	0.81[YRI][hapmap]
rs6681766	1.00[CHB][hapmap]
rs6687872	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs6696680	0.90[CHB][hapmap]
rs7513933	0.81[ASN][1000 genomes]
rs7514556	0.90[CHB][hapmap]
rs7524592	0.81[CHB][hapmap]
rs7525100	0.81[CHB][hapmap]
rs7530469	0.80[CHB][hapmap]
rs7541082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7549074	0.81[CHB][hapmap]
rs7552723	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs898657	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs898658	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs898659	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs912767	0.80[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10798290		cis	Lymphoblastoid	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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