Variant report

Variant	rs61828914
Chromosome Location	chr1:173550127-173550128
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr1:173548798-173550214	PBDE	blood:	n/a	chr1:173549426-173549435 chr1:173550141-173550151

Variant related genes	Relation type
SLC9C2	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10798290	0.80[ASN][1000 genomes]
rs10798291	0.83[ASN][1000 genomes]
rs10798292	0.83[ASN][1000 genomes]
rs10912651	0.90[ASN][1000 genomes]
rs11582670	0.82[ASN][1000 genomes]
rs12032386	0.80[ASN][1000 genomes]
rs12032790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12039524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12041743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12065988	0.86[ASN][1000 genomes]
rs12561820	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12568477	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2422467	0.85[ASN][1000 genomes]
rs2901747	0.83[ASN][1000 genomes]
rs2901748	0.83[ASN][1000 genomes]
rs33951697	0.89[AMR][1000 genomes]
rs34332254	0.89[AMR][1000 genomes]
rs34754266	0.80[ASN][1000 genomes]
rs35379498	0.89[AMR][1000 genomes]
rs35607505	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61826760	0.81[ASN][1000 genomes]
rs61826764	0.85[ASN][1000 genomes]
rs61826765	0.85[ASN][1000 genomes]
rs61826766	0.81[ASN][1000 genomes]
rs61826768	0.81[ASN][1000 genomes]
rs61826769	0.80[ASN][1000 genomes]
rs61828886	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61828887	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61828888	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61828911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61828913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61828922	0.88[ASN][1000 genomes]
rs61828923	0.88[ASN][1000 genomes]
rs6425251	0.83[ASN][1000 genomes]
rs6674589	0.86[ASN][1000 genomes]
rs6696443	0.81[EUR][1000 genomes]
rs72709357	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs727924	0.85[ASN][1000 genomes]
rs7413754	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7513933	0.81[ASN][1000 genomes]
rs7525100	0.89[AMR][1000 genomes]
rs7552723	0.83[ASN][1000 genomes]
rs898657	0.82[ASN][1000 genomes]
rs898658	0.82[ASN][1000 genomes]
rs898659	0.82[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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