Variant report

Variant	rs6696443
Chromosome Location	chr1:173494210-173494211
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173486340..173488146-chr1:173493841..173495951,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10399838	0.81[ASN][1000 genomes]
rs10737301	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs10753078	0.94[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs10753079	0.82[EUR][1000 genomes]
rs10753080	0.82[EUR][1000 genomes]
rs10798283	0.80[ASN][1000 genomes]
rs10798284	0.81[ASN][1000 genomes]
rs10798285	0.81[ASN][1000 genomes]
rs10798290	0.81[CHB][hapmap]
rs10912624	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10912626	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10912634	0.81[ASN][1000 genomes]
rs10912635	0.81[ASN][1000 genomes]
rs10912636	0.81[ASN][1000 genomes]
rs10912641	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10912643	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12026427	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12026677	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12032790	0.81[EUR][1000 genomes]
rs12033623	0.80[ASN][1000 genomes]
rs12034341	0.81[ASN][1000 genomes]
rs12035105	0.81[ASN][1000 genomes]
rs12037210	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12039524	0.88[CEU][hapmap]
rs12041114	0.81[ASN][1000 genomes]
rs12041743	0.81[EUR][1000 genomes]
rs12042027	0.81[EUR][1000 genomes]
rs12058528	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12065426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12077271	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080769	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12406500	0.81[ASN][1000 genomes]
rs12565753	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724371	0.84[EUR][1000 genomes]
rs12744504	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs12745058	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12753631	0.84[EUR][1000 genomes]
rs12760501	0.84[EUR][1000 genomes]
rs1461014	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1461023	0.81[ASN][1000 genomes]
rs1547155	0.81[ASN][1000 genomes]
rs1547156	0.81[ASN][1000 genomes]
rs16846113	0.81[ASN][1000 genomes]
rs1886639	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs33942654	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33951697	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34025182	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34259759	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34296122	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34331061	0.84[EUR][1000 genomes]
rs34332254	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34919111	0.84[EUR][1000 genomes]
rs34931189	0.85[ASN][1000 genomes]
rs35065145	0.81[ASN][1000 genomes]
rs35379498	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35607505	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35632090	0.84[EUR][1000 genomes]
rs35831548	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35845062	0.84[EUR][1000 genomes]
rs36058163	0.84[EUR][1000 genomes]
rs3934575	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs3934576	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs4244195	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs4244196	0.82[EUR][1000 genomes]
rs4294450	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs4310474	0.94[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs4462186	0.84[EUR][1000 genomes]
rs4539167	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs4916368	0.81[ASN][1000 genomes]
rs57032935	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60055251	0.80[AFR][1000 genomes]
rs60769229	0.81[AFR][1000 genomes]
rs61826747	0.84[EUR][1000 genomes]
rs61826748	0.86[EUR][1000 genomes]
rs61826749	0.86[EUR][1000 genomes]
rs61826753	0.82[ASN][1000 genomes]
rs61828886	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61828887	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61828888	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61828913	0.81[EUR][1000 genomes]
rs61828914	0.81[EUR][1000 genomes]
rs6425232	0.83[EUR][1000 genomes]
rs6425251	0.80[CHB][hapmap]
rs6660804	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6663036	0.81[AFR][1000 genomes]
rs66683313	0.86[EUR][1000 genomes]
rs6670071	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6671141	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs6675929	0.81[ASN][1000 genomes]
rs6681766	0.80[CHB][hapmap]
rs6687872	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6699094	0.93[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs67180872	0.83[ASN][1000 genomes]
rs68193118	0.86[EUR][1000 genomes]
rs72709325	0.81[ASN][1000 genomes]
rs728908	0.81[ASN][1000 genomes]
rs7413754	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745573	0.81[ASN][1000 genomes]
rs745574	0.81[ASN][1000 genomes]
rs7516544	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520641	0.82[EUR][1000 genomes]
rs7521536	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7524403	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7524592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7525100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7529089	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7529377	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530469	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs7541082	0.81[CHB][hapmap]
rs7549074	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs912767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173488400-173495200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:173488400-173496000	Weak transcription	Right Atrium	heart
3	chr1:173488400-173496800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:173491000-173496400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:173492000-173495200	Weak transcription	Placenta	Placenta
6	chr1:173493200-173495400	Weak transcription	Liver	Liver
7	chr1:173494200-173495600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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