Variant report

Variant	rs12033623
Chromosome Location	chr1:173487499-173487500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173485631..173487913-chr1:173488725..173492186,3	K562	blood:
2	chr1:173486340..173488146-chr1:173493841..173495951,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1024266	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10399838	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10494490	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10737301	0.94[CHB][hapmap]
rs10737303	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10753078	0.89[CHB][hapmap]
rs10798283	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798284	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798285	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912621	0.89[AFR][1000 genomes]
rs10912624	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912625	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912626	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912632	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10912634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912635	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912636	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912641	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10912642	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10912643	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10912651	0.83[AMR][1000 genomes]
rs10912656	0.80[AMR][1000 genomes]
rs11582670	0.86[AMR][1000 genomes]
rs12026427	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12026637	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12026677	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12026993	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12027451	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12027495	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12034341	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12034533	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12035105	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12037210	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12041114	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12065426	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs12077271	0.80[ASN][1000 genomes]
rs12406352	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12406500	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12565753	0.80[ASN][1000 genomes]
rs12744504	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs12745058	0.80[ASN][1000 genomes]
rs1461014	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1461023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1547155	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846206	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1886639	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925340	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2017323	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422433	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2901747	0.81[AMR][1000 genomes]
rs2901748	0.81[AMR][1000 genomes]
rs35607505	0.80[ASN][1000 genomes]
rs3934575	0.94[CHB][hapmap]
rs3934576	0.94[CHB][hapmap]
rs4244195	0.94[CHB][hapmap]
rs4294450	0.94[CHB][hapmap]
rs4310474	0.89[CHB][hapmap]
rs4336887	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4539167	0.95[CHB][hapmap]
rs4916365	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916368	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60043192	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425248	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425249	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6660804	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs6675929	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6687872	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6696443	0.80[ASN][1000 genomes]
rs6699094	0.89[CHB][hapmap]
rs6702320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72709325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs728908	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7413754	0.80[ASN][1000 genomes]
rs745573	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs745574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7516544	0.80[ASN][1000 genomes]
rs7520814	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7524592	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7525100	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7530469	0.94[CHB][hapmap]
rs7549074	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs898657	0.86[AMR][1000 genomes]
rs898658	0.84[AMR][1000 genomes]
rs898659	0.84[AMR][1000 genomes]
rs912767	0.94[CHB][hapmap];0.90[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173487200-173488600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr1:173487400-173488000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:173487400-173488600	Enhancers	Primary T cells from cord blood	blood
4	chr1:173487400-173488600	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links