Variant report

Variant	rs10912651
Chromosome Location	chr1:173549157-173549158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:173549084-173549406	K562	blood:	n/a	n/a
2	GATA1	chr1:173548798-173550214	PBDE	blood:	n/a	chr1:173549426-173549435 chr1:173550141-173550151
3	RAD21	chr1:173549110-173549328	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173546698..173549628-chr1:173553244..173556052,2	K562	blood:

Variant related genes	Relation type
SLC9C2	TF binding region

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1024266	0.81[AMR][1000 genomes]
rs1031751	1.00[YRI][hapmap]
rs10798283	0.83[AMR][1000 genomes]
rs10798290	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10798291	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10798292	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10912624	0.82[CEU][hapmap]
rs10912625	0.81[AMR][1000 genomes]
rs10912626	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs10912634	0.83[AMR][1000 genomes]
rs10912635	0.82[AMR][1000 genomes]
rs10912636	0.82[AMR][1000 genomes]
rs10912641	0.86[CEU][hapmap]
rs10912643	0.87[CEU][hapmap]
rs10912656	0.83[AMR][1000 genomes]
rs10912671	0.84[CHB][hapmap]
rs11582670	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12026427	0.87[CEU][hapmap];0.83[AMR][1000 genomes]
rs12026637	0.81[AMR][1000 genomes]
rs12026677	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs12026993	0.81[AMR][1000 genomes]
rs12027451	0.81[AMR][1000 genomes]
rs12027495	0.81[AMR][1000 genomes]
rs12032386	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12032790	0.85[ASN][1000 genomes]
rs12033623	0.83[AMR][1000 genomes]
rs12034341	0.83[AMR][1000 genomes]
rs12035105	0.83[AMR][1000 genomes]
rs12037210	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs12039524	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs12041114	0.82[AMR][1000 genomes]
rs12041743	0.85[ASN][1000 genomes]
rs12042027	0.85[ASN][1000 genomes]
rs12082131	0.85[CHB][hapmap]
rs12406352	0.81[AMR][1000 genomes]
rs12406500	0.83[AMR][1000 genomes]
rs12561820	0.81[ASN][1000 genomes]
rs1461014	0.87[CEU][hapmap]
rs1461023	0.83[AMR][1000 genomes]
rs1547156	0.83[AMR][1000 genomes]
rs16846113	0.83[AMR][1000 genomes]
rs16846206	0.81[AMR][1000 genomes]
rs1886639	0.86[CEU][hapmap]
rs2017323	0.81[AMR][1000 genomes]
rs2273366	0.84[CHB][hapmap]
rs2901747	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2901748	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34754266	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4336887	0.82[AMR][1000 genomes]
rs4916365	0.81[AMR][1000 genomes]
rs4916368	0.83[AMR][1000 genomes]
rs60043192	0.81[AMR][1000 genomes]
rs61828911	0.83[ASN][1000 genomes]
rs61828913	0.85[ASN][1000 genomes]
rs61828914	0.90[ASN][1000 genomes]
rs6413827	0.84[CHB][hapmap]
rs6425251	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6425258	0.84[CHB][hapmap]
rs6675929	0.83[AMR][1000 genomes]
rs6681766	0.95[CHB][hapmap]
rs6687872	0.82[CEU][hapmap]
rs6696680	0.85[CHB][hapmap]
rs6702320	0.83[AMR][1000 genomes]
rs72709325	0.83[AMR][1000 genomes]
rs72709357	0.87[ASN][1000 genomes]
rs728908	0.83[AMR][1000 genomes]
rs745573	0.83[AMR][1000 genomes]
rs745574	0.83[AMR][1000 genomes]
rs7514556	0.85[CHB][hapmap]
rs7541082	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7552723	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs898657	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs898658	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs898659	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173548800-173549200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:173549000-173549200	Bivalent Enhancer	K562	blood

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