Variant report

Variant	rs1461023
Chromosome Location	chr1:173498143-173498144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173490173..173492783-chr1:173495928..173498517,3	K562	blood:
2	chr1:173496870..173499125-chr1:173501747..173503656,2	K562	blood:
3	chr1:173498122..173499925-chr1:173505149..173506733,2	K562	blood:
4	chr1:173496493..173499619-chr1:173501510..173504618,3	K562	blood:
5	chr1:173496848..173499075-chr1:173504402..173505965,2	MCF-7	breast:
6	chr1:173490173..173491820-chr1:173495928..173498517,2	K562	blood:
7	chr1:173496692..173499395-chr1:173502096..173503958,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1024266	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10399838	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10494490	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10737303	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798283	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798284	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798285	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912621	0.89[AFR][1000 genomes]
rs10912624	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912625	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10912626	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10912632	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10912634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912635	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912636	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912641	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912642	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912643	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912651	0.83[AMR][1000 genomes]
rs10912656	0.80[AMR][1000 genomes]
rs11582670	0.86[AMR][1000 genomes]
rs12026427	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12026637	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12026677	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12026993	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12027451	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12027495	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12033623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12034341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12034533	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12035105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12037210	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12041114	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12077271	0.81[ASN][1000 genomes]
rs12406352	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12406500	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12565753	0.81[ASN][1000 genomes]
rs12745058	0.81[ASN][1000 genomes]
rs1461014	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1547155	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846206	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1886639	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1925340	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2017323	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2422433	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2901747	0.81[AMR][1000 genomes]
rs2901748	0.81[AMR][1000 genomes]
rs35607505	0.81[ASN][1000 genomes]
rs4336887	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4916365	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4916368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60043192	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6425248	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6425249	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6675929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6687872	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6696443	0.81[ASN][1000 genomes]
rs6702320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72709325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs728908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7413754	0.81[ASN][1000 genomes]
rs745573	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs745574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7516544	0.81[ASN][1000 genomes]
rs7520814	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs898657	0.86[AMR][1000 genomes]
rs898658	0.84[AMR][1000 genomes]
rs898659	0.84[AMR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173495000-173500200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:173496400-173498400	Weak transcription	K562	blood
3	chr1:173496400-173498800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:173496400-173501200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:173496400-173501800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:173496600-173498800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:173496600-173499000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:173496800-173498200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:173496800-173499200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:173496800-173499200	Weak transcription	Placenta	Placenta
11	chr1:173496800-173500400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:173496800-173501200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:173496800-173501600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:173497000-173500400	Weak transcription	Adipose Nuclei	Adipose
15	chr1:173497200-173499400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:173497200-173500400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:173497400-173498400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:173497400-173498600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr1:173497400-173500400	Weak transcription	Brain Substantia Nigra	brain
20	chr1:173497600-173498800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:173497600-173499000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr1:173497600-173500400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr1:173497800-173498400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr1:173497800-173498600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:173497800-173498800	Enhancers	Primary T cells from cord blood	blood
26	chr1:173497800-173499200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:173497800-173499800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:173497800-173500000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:173498000-173498600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:173498000-173498800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:173498000-173499800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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