Variant report

Variant	rs72709325
Chromosome Location	chr1:173488024-173488025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173486340..173488146-chr1:173493841..173495951,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1024266	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10399838	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10494490	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10737303	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798283	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798284	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798285	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912621	0.89[AFR][1000 genomes]
rs10912624	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10912625	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912626	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912632	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10912634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912635	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912636	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912641	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912642	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912643	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912651	0.83[AMR][1000 genomes]
rs10912656	0.80[AMR][1000 genomes]
rs11582670	0.86[AMR][1000 genomes]
rs12026427	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12026637	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026677	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026993	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12027451	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12027495	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12033623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12034341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034533	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12035105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037210	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12041114	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077271	0.81[ASN][1000 genomes]
rs12406352	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12406500	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565753	0.81[ASN][1000 genomes]
rs12745058	0.81[ASN][1000 genomes]
rs1461014	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1461023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547155	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16846113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16846206	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1886639	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1925340	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2017323	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2422433	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2901747	0.81[AMR][1000 genomes]
rs2901748	0.81[AMR][1000 genomes]
rs35607505	0.81[ASN][1000 genomes]
rs4336887	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4916365	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4916368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60043192	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6425248	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6425249	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6675929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687872	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696443	0.81[ASN][1000 genomes]
rs6702320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs728908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7413754	0.81[ASN][1000 genomes]
rs745573	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516544	0.81[ASN][1000 genomes]
rs7520814	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898657	0.86[AMR][1000 genomes]
rs898658	0.84[AMR][1000 genomes]
rs898659	0.84[AMR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173487200-173488600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr1:173487400-173488600	Enhancers	Primary T cells from cord blood	blood
3	chr1:173487400-173488600	Enhancers	Dnd41	blood
4	chr1:173487600-173488200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:173487600-173488200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr1:173487600-173488200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:173487600-173488200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:173487600-173488400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:173487600-173488400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:173487600-173488400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:173487600-173488400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:173487600-173488600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:173487600-173488600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:173487600-173488600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:173487600-173488600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:173487600-173488600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr1:173487600-173488600	Enhancers	Fetal Kidney	kidney
18	chr1:173487800-173488400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr1:173487800-173488400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr1:173487800-173488400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:173488000-173488400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr1:173488000-173488400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr1:173488000-173488400	Enhancers	Brain Anterior Caudate	brain
24	chr1:173488000-173489600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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