Variant report

Variant	rs35607505
Chromosome Location	chr1:173497452-173497453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173490173..173492783-chr1:173495928..173498517,3	K562	blood:
2	chr1:173496870..173499125-chr1:173501747..173503656,2	K562	blood:
3	chr1:173496493..173499619-chr1:173501510..173504618,3	K562	blood:
4	chr1:173496848..173499075-chr1:173504402..173505965,2	MCF-7	breast:
5	chr1:173459417..173461304-chr1:173495286..173497906,2	K562	blood:
6	chr1:173490173..173491820-chr1:173495928..173498517,2	K562	blood:
7	chr1:173496692..173499395-chr1:173502096..173503958,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10399838	0.81[ASN][1000 genomes]
rs10737301	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10753078	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10753079	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10753080	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10798283	0.80[ASN][1000 genomes]
rs10798284	0.81[ASN][1000 genomes]
rs10798285	0.81[ASN][1000 genomes]
rs10912634	0.81[ASN][1000 genomes]
rs10912635	0.81[ASN][1000 genomes]
rs10912636	0.81[ASN][1000 genomes]
rs12032790	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12033623	0.80[ASN][1000 genomes]
rs12034341	0.81[ASN][1000 genomes]
rs12035105	0.81[ASN][1000 genomes]
rs12039524	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12041114	0.81[ASN][1000 genomes]
rs12041743	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12042027	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12058528	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12065426	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12077271	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080769	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12406500	0.81[ASN][1000 genomes]
rs12565753	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724371	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12744504	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12745058	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12753631	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12760501	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1461023	0.81[ASN][1000 genomes]
rs1547155	0.81[ASN][1000 genomes]
rs1547156	0.81[ASN][1000 genomes]
rs16846113	0.81[ASN][1000 genomes]
rs1886639	0.80[ASN][1000 genomes]
rs33942654	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33951697	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34025182	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34259759	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34296122	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34331061	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34332254	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34919111	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34931189	0.85[ASN][1000 genomes]
rs35065145	0.81[ASN][1000 genomes]
rs35379498	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35632090	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35831548	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35845062	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36058163	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3934575	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3934576	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4244195	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4244196	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4294450	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4310474	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4462186	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4539167	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4916368	0.81[ASN][1000 genomes]
rs57032935	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61826747	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61826748	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61826749	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61826753	0.82[ASN][1000 genomes]
rs61828886	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61828887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61828888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61828911	0.92[AMR][1000 genomes]
rs61828913	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61828914	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6425232	0.84[EUR][1000 genomes]
rs6660804	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66683313	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6670071	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6671141	0.87[EUR][1000 genomes]
rs6675929	0.81[ASN][1000 genomes]
rs6696443	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699094	0.85[EUR][1000 genomes]
rs67180872	0.83[ASN][1000 genomes]
rs68193118	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709325	0.81[ASN][1000 genomes]
rs72709357	0.82[AMR][1000 genomes]
rs728908	0.81[ASN][1000 genomes]
rs7413754	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745573	0.81[ASN][1000 genomes]
rs745574	0.81[ASN][1000 genomes]
rs7516544	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520641	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7521536	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7524403	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7524592	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7525100	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7529089	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7529377	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530469	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7549074	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs912767	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173494800-173497800	Enhancers	Hela-S3	cervix
2	chr1:173495000-173500200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173496400-173497800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:173496400-173498400	Weak transcription	K562	blood
5	chr1:173496400-173498800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:173496400-173501200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:173496400-173501800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:173496600-173498800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:173496600-173499000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:173496800-173498000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:173496800-173498200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:173496800-173499200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:173496800-173499200	Weak transcription	Placenta	Placenta
14	chr1:173496800-173500400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:173496800-173501200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:173496800-173501600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:173497000-173497600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr1:173497000-173500400	Weak transcription	Adipose Nuclei	Adipose
19	chr1:173497200-173498000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr1:173497200-173499400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr1:173497200-173500400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:173497400-173498400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:173497400-173498600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:173497400-173500400	Weak transcription	Brain Substantia Nigra	brain

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