Variant report

Variant	rs12039524
Chromosome Location	chr1:173549827-173549828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr1:173548798-173550214	PBDE	blood:	n/a	chr1:173549426-173549435 chr1:173550141-173550151
2	RCOR1	chr1:173549725-173549947	K562	blood:	n/a	n/a

Variant related genes	Relation type
SLC9C2	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10737301	0.82[CEU][hapmap]
rs10753078	0.82[CEU][hapmap]
rs10798290	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs10798291	0.81[ASN][1000 genomes]
rs10798292	0.81[ASN][1000 genomes]
rs10912651	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10912671	0.85[CHB][hapmap]
rs11582670	0.80[ASN][1000 genomes]
rs12032790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12041743	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12042027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12065426	0.88[CEU][hapmap]
rs12065988	0.88[ASN][1000 genomes]
rs12082131	0.85[CHB][hapmap]
rs12561820	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12568477	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12744504	0.82[CEU][hapmap]
rs2273366	0.85[CHB][hapmap]
rs2422467	0.87[ASN][1000 genomes]
rs2901747	0.81[ASN][1000 genomes]
rs2901748	0.81[ASN][1000 genomes]
rs33951697	0.89[AMR][1000 genomes]
rs34332254	0.89[AMR][1000 genomes]
rs35379498	0.89[AMR][1000 genomes]
rs35607505	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3934575	0.82[CEU][hapmap]
rs3934576	0.82[CEU][hapmap]
rs4244195	0.82[CEU][hapmap]
rs4294450	0.82[CEU][hapmap]
rs4310474	0.82[CEU][hapmap]
rs4539167	0.82[CEU][hapmap]
rs61826760	0.83[ASN][1000 genomes]
rs61826764	0.87[ASN][1000 genomes]
rs61826765	0.87[ASN][1000 genomes]
rs61826766	0.83[ASN][1000 genomes]
rs61826768	0.83[ASN][1000 genomes]
rs61826769	0.82[ASN][1000 genomes]
rs61828886	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61828887	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61828888	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61828911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61828913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61828914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61828922	0.90[ASN][1000 genomes]
rs61828923	0.90[ASN][1000 genomes]
rs6413827	0.85[CHB][hapmap]
rs6425251	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6425258	0.85[CHB][hapmap]
rs6660804	0.88[CEU][hapmap]
rs6671141	0.88[CEU][hapmap]
rs6674589	0.88[ASN][1000 genomes]
rs6681766	0.95[CHB][hapmap]
rs6696680	0.85[CHB][hapmap]
rs6699094	0.81[CEU][hapmap]
rs72709357	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs727924	0.87[ASN][1000 genomes]
rs7413754	0.87[AMR][1000 genomes]
rs7513933	0.83[ASN][1000 genomes]
rs7514556	0.85[CHB][hapmap]
rs7524592	0.88[CEU][hapmap]
rs7525100	0.88[CEU][hapmap];0.89[AMR][1000 genomes]
rs7530469	0.82[CEU][hapmap]
rs7541082	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7549074	0.82[CEU][hapmap]
rs7552723	0.81[ASN][1000 genomes]
rs898657	0.80[ASN][1000 genomes]
rs898658	0.80[ASN][1000 genomes]
rs898659	0.80[ASN][1000 genomes]
rs912767	0.88[CEU][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links