Variant report

Variant	rs6674589
Chromosome Location	chr1:173588081-173588082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10798290	0.80[ASN][1000 genomes]
rs10798291	0.83[ASN][1000 genomes]
rs10798292	0.83[ASN][1000 genomes]
rs10912660	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10912670	0.81[AFR][1000 genomes]
rs12032386	0.80[ASN][1000 genomes]
rs12032790	0.85[ASN][1000 genomes]
rs12039524	0.88[ASN][1000 genomes]
rs12041743	0.85[ASN][1000 genomes]
rs12042027	0.85[ASN][1000 genomes]
rs12065988	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12067170	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12075071	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12092383	0.81[AFR][1000 genomes]
rs12561820	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12568477	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2422467	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28825469	0.90[AFR][1000 genomes]
rs2901747	0.83[ASN][1000 genomes]
rs2901748	0.83[ASN][1000 genomes]
rs34754266	0.80[ASN][1000 genomes]
rs56138893	0.89[EUR][1000 genomes]
rs57592568	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs58287165	0.86[EUR][1000 genomes]
rs58706672	0.80[ASN][1000 genomes]
rs59858609	0.87[EUR][1000 genomes]
rs61826760	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61826764	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61826765	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61826766	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61826768	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61826769	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61826805	0.88[EUR][1000 genomes]
rs61826806	0.87[EUR][1000 genomes]
rs61826809	0.88[EUR][1000 genomes]
rs61826810	0.85[EUR][1000 genomes]
rs61828911	0.84[ASN][1000 genomes]
rs61828913	0.85[ASN][1000 genomes]
rs61828914	0.86[ASN][1000 genomes]
rs61828922	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61828923	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6425251	0.83[ASN][1000 genomes]
rs6681766	0.88[EUR][1000 genomes]
rs6696680	0.81[AFR][1000 genomes]
rs72709357	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs727924	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7513933	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7542910	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7552723	0.83[ASN][1000 genomes]
rs969029	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6674589	SERPINC1	cis	Muscle Skeletal	GTEx
rs6674589	CLN5	trans	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173586000-173588800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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