Variant report

Variant	rs12042027
Chromosome Location	chr1:173540004-173540005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173539981..173542937-chr1:173592354..173595230,2	MCF-7	breast:
2	chr1:173539762..173541547-chr1:173573962..173575508,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10912651	0.85[ASN][1000 genomes]
rs11582670	0.83[ASN][1000 genomes]
rs12032790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12041743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065988	0.85[ASN][1000 genomes]
rs12561820	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12568477	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2422467	0.84[ASN][1000 genomes]
rs33951697	0.89[AMR][1000 genomes]
rs34332254	0.89[AMR][1000 genomes]
rs35379498	0.89[AMR][1000 genomes]
rs35607505	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61826760	0.80[ASN][1000 genomes]
rs61826764	0.84[ASN][1000 genomes]
rs61826765	0.84[ASN][1000 genomes]
rs61826766	0.80[ASN][1000 genomes]
rs61826768	0.80[ASN][1000 genomes]
rs61828886	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61828887	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61828888	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61828911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61828913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61828922	0.87[ASN][1000 genomes]
rs61828923	0.87[ASN][1000 genomes]
rs6674589	0.85[ASN][1000 genomes]
rs6696443	0.81[EUR][1000 genomes]
rs72709357	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs727924	0.84[ASN][1000 genomes]
rs7413754	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7513933	0.80[ASN][1000 genomes]
rs7525100	0.89[AMR][1000 genomes]
rs898657	0.83[ASN][1000 genomes]
rs898658	0.83[ASN][1000 genomes]
rs898659	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173539000-173540600	Enhancers	HSMMtube	muscle
2	chr1:173539200-173540400	Enhancers	Dnd41	blood
3	chr1:173539400-173540200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:173539600-173540600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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