Variant report

Variant	rs61828888
Chromosome Location	chr1:173522153-173522154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173521720..173523239-chr1:173523981..173526705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238272	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10737301	0.81[AMR][1000 genomes]
rs10753078	0.84[AMR][1000 genomes]
rs10753079	0.81[AMR][1000 genomes]
rs10753080	0.81[AMR][1000 genomes]
rs10912641	0.81[ASN][1000 genomes]
rs10912642	0.81[ASN][1000 genomes]
rs10912643	0.81[ASN][1000 genomes]
rs12026427	0.81[ASN][1000 genomes]
rs12032790	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12039524	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12041743	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12042027	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12058528	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12065426	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12077271	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12080769	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12565753	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12724371	0.84[AMR][1000 genomes]
rs12744504	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12745058	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12753631	0.82[AMR][1000 genomes]
rs12760501	0.84[AMR][1000 genomes]
rs1461014	0.81[ASN][1000 genomes]
rs2422433	0.81[ASN][1000 genomes]
rs33942654	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs33951697	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34025182	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34259759	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34296122	0.84[AMR][1000 genomes]
rs34331061	0.82[AMR][1000 genomes]
rs34332254	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34919111	0.82[AMR][1000 genomes]
rs34931189	0.82[ASN][1000 genomes]
rs35379498	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35607505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35632090	0.82[AMR][1000 genomes]
rs35831548	0.84[AMR][1000 genomes]
rs35845062	0.82[AMR][1000 genomes]
rs36058163	0.82[AMR][1000 genomes]
rs3934575	0.84[AMR][1000 genomes]
rs3934576	0.82[AMR][1000 genomes]
rs4244195	0.81[AMR][1000 genomes]
rs4244196	0.81[AMR][1000 genomes]
rs4294450	0.84[AMR][1000 genomes]
rs4310474	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4336887	0.81[ASN][1000 genomes]
rs4462186	0.84[AMR][1000 genomes]
rs4539167	0.84[AMR][1000 genomes]
rs57032935	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61826747	0.84[AMR][1000 genomes]
rs61826748	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61826749	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61826753	0.81[ASN][1000 genomes]
rs61828886	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61828887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828911	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61828913	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61828914	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6660804	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66683313	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6670071	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6671141	0.82[EUR][1000 genomes]
rs6696443	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67180872	0.86[ASN][1000 genomes]
rs68193118	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72709357	0.82[AMR][1000 genomes]
rs7413754	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7516544	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7520641	0.81[AMR][1000 genomes]
rs7521536	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7524403	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7524592	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7525100	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7529089	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529377	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7530469	0.82[AMR][1000 genomes]
rs7549074	0.84[AMR][1000 genomes]
rs912767	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173516600-173523600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:173517200-173523000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:173518000-173523800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:173518200-173523600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:173518400-173522600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:173518400-173523400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr1:173518600-173522800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr1:173518600-173523000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:173519000-173522800	Enhancers	Primary T cells from cord blood	blood
10	chr1:173519000-173523600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr1:173520000-173523600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:173520400-173523400	Weak transcription	HUVEC	blood vessel
13	chr1:173520600-173523000	Weak transcription	K562	blood
14	chr1:173521000-173523400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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