Variant report

Variant	rs7524592
Chromosome Location	chr1:173466057-173466058
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173465625..173468364-chr1:173836919..173838793,2	K562	blood:

Variant related genes	Relation type
ENSG00000234741	Chromatin interaction
ENSG00000185278	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1024266	0.81[ASN][1000 genomes]
rs10737301	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs10737303	0.81[ASN][1000 genomes]
rs10753078	0.94[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs10753079	0.85[EUR][1000 genomes]
rs10753080	0.85[EUR][1000 genomes]
rs10798290	0.81[CHB][hapmap]
rs10912624	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10912625	0.81[ASN][1000 genomes]
rs10912626	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10912641	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10912643	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12026427	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12026637	0.81[ASN][1000 genomes]
rs12026677	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12026993	0.81[ASN][1000 genomes]
rs12027451	0.81[ASN][1000 genomes]
rs12027495	0.81[ASN][1000 genomes]
rs12037210	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12039524	0.88[CEU][hapmap]
rs12058528	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12065426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077271	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12080769	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565753	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12724371	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12744504	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12745058	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12753631	0.87[EUR][1000 genomes]
rs12760501	0.87[EUR][1000 genomes]
rs1461014	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1886639	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2017323	0.81[ASN][1000 genomes]
rs33942654	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs33951697	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34025182	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34259759	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34296122	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34331061	0.87[EUR][1000 genomes]
rs34332254	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34919111	0.87[EUR][1000 genomes]
rs34931189	0.86[ASN][1000 genomes]
rs35065145	0.83[ASN][1000 genomes]
rs35379498	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607505	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35632090	0.87[EUR][1000 genomes]
rs35831548	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35845062	0.87[EUR][1000 genomes]
rs36058163	0.87[EUR][1000 genomes]
rs3934575	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs3934576	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs4244195	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs4244196	0.85[EUR][1000 genomes]
rs4294450	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs4310474	0.94[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs4462186	0.87[EUR][1000 genomes]
rs4539167	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs4916365	0.81[ASN][1000 genomes]
rs57032935	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60043192	0.81[ASN][1000 genomes]
rs61826747	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826748	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826749	0.88[EUR][1000 genomes]
rs61826753	0.84[ASN][1000 genomes]
rs61828886	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61828887	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61828888	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6425232	0.86[EUR][1000 genomes]
rs6425251	0.80[CHB][hapmap]
rs6660804	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66683313	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6670071	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6671141	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6687872	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6696443	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6699094	0.93[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs67180872	0.83[ASN][1000 genomes]
rs68193118	0.88[EUR][1000 genomes]
rs7413754	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7516544	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7520641	0.85[EUR][1000 genomes]
rs7521536	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524403	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7529089	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7529377	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530469	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs7541082	0.81[CHB][hapmap]
rs7549074	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs912767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173448000-173477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:173457200-173466200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:173457200-173466800	Weak transcription	Gastric	stomach
4	chr1:173458600-173467200	Weak transcription	HSMMtube	muscle
5	chr1:173458600-173468400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:173458600-173475600	Weak transcription	Fetal Kidney	kidney
7	chr1:173458600-173476600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:173458800-173466200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:173458800-173470400	Weak transcription	Ovary	ovary
10	chr1:173459400-173474000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:173459400-173475400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:173459600-173470000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:173459800-173469200	Weak transcription	Left Ventricle	heart
14	chr1:173461800-173470200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:173464400-173466600	Enhancers	Hela-S3	cervix
16	chr1:173465000-173466400	Enhancers	K562	blood
17	chr1:173465400-173466400	Weak transcription	Liver	Liver
18	chr1:173466000-173466400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:173466000-173466400	ZNF genes & repeats	Adipose Nuclei	Adipose

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