Variant report

Variant	rs61826749
Chromosome Location	chr1:173418267-173418268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173416986..173418856-chr1:173445427..173447378,2	K562	blood:
2	chr1:173411324..173413995-chr1:173416613..173418814,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDX6-3	chr1:173417982-173422405	NONHSAT007635

Variant related genes	Relation type
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10737301	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10753078	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10753079	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10753080	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12058528	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12065426	0.87[EUR][1000 genomes]
rs12077271	0.82[EUR][1000 genomes]
rs12080769	0.88[EUR][1000 genomes]
rs12565753	0.83[EUR][1000 genomes]
rs12724371	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12744504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12745058	0.83[EUR][1000 genomes]
rs12753631	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12760501	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33942654	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs33951697	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34025182	0.88[EUR][1000 genomes]
rs34259759	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34296122	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34331061	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34332254	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34919111	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35065145	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35379498	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35607505	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35632090	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35831548	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35845062	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36058163	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3934575	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3934576	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4244195	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4244196	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4294450	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4310474	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4462186	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4539167	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57032935	0.87[EUR][1000 genomes]
rs61826747	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61826748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61826753	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61828886	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61828887	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61828888	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6425232	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6660804	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66683313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6670071	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6671141	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6696443	0.86[EUR][1000 genomes]
rs6699094	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68193118	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7413754	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7516544	0.83[EUR][1000 genomes]
rs7520641	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7521536	0.87[EUR][1000 genomes]
rs7524403	0.87[EUR][1000 genomes]
rs7524592	0.88[EUR][1000 genomes]
rs7525100	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7529089	0.88[EUR][1000 genomes]
rs7529377	0.88[EUR][1000 genomes]
rs7530469	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7549074	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs912767	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173376200-173429000	Weak transcription	Gastric	stomach
2	chr1:173387600-173429000	Weak transcription	Lung	lung
3	chr1:173391800-173429000	Weak transcription	Ovary	ovary
4	chr1:173399400-173424200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:173400200-173421000	Weak transcription	Psoas Muscle	Psoas
6	chr1:173400200-173422800	Weak transcription	NH-A	brain
7	chr1:173400400-173429000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr1:173400600-173428800	Weak transcription	Fetal Stomach	stomach
9	chr1:173400800-173420600	Weak transcription	Hela-S3	cervix
10	chr1:173400800-173421000	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:173400800-173422800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:173400800-173429000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:173400800-173429000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:173401000-173421000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:173401000-173421000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:173401000-173422800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:173401000-173428800	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:173401000-173429000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:173401000-173429000	Weak transcription	Left Ventricle	heart
20	chr1:173401200-173422800	Weak transcription	HSMM	muscle
21	chr1:173401800-173429000	Weak transcription	Primary B cells from cord blood	blood
22	chr1:173404200-173429000	Weak transcription	Adipose Nuclei	Adipose
23	chr1:173404200-173429000	Weak transcription	Right Ventricle	heart
24	chr1:173404400-173423000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:173408800-173422800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:173408800-173422800	Weak transcription	HSMMtube	muscle
27	chr1:173408800-173422800	Weak transcription	K562	blood
28	chr1:173408800-173429000	Weak transcription	Brain Substantia Nigra	brain
29	chr1:173408800-173429000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr1:173409000-173428800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr1:173409000-173428800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:173409000-173429200	Weak transcription	Aorta	Aorta
33	chr1:173411400-173427000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:173411600-173428800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:173413400-173429200	Weak transcription	Placenta	Placenta
36	chr1:173414600-173429000	Weak transcription	Thymus	Thymus
37	chr1:173415000-173422800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr1:173415000-173424200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr1:173415000-173424200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr1:173415600-173429000	Weak transcription	Brain Angular Gyrus	brain
41	chr1:173416000-173420800	Weak transcription	Liver	Liver
42	chr1:173416000-173429000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr1:173416200-173423600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr1:173416200-173424400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:173416200-173429000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:173416400-173429000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr1:173416400-173430000	Weak transcription	Fetal Lung	lung
48	chr1:173416600-173421200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:173416600-173429400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:173416800-173423000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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