Variant report

Variant	rs4336887
Chromosome Location	chr1:173522942-173522943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr1:173522450-173523362	PBDE	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173521720..173523239-chr1:173523981..173526705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238272	TF binding region
ENSG00000238272	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1024266	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10399838	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10494490	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10737303	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10798283	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10798284	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10798285	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912621	0.80[AMR][1000 genomes]
rs10912624	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912625	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10912626	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10912632	0.94[AMR][1000 genomes]
rs10912634	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10912635	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912636	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912641	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912642	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912643	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912651	0.82[AMR][1000 genomes]
rs10912656	0.81[AMR][1000 genomes]
rs11582670	0.85[AMR][1000 genomes]
rs12026427	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026637	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12026677	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12026993	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12027451	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12027495	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12033623	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12034341	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12034533	0.94[AMR][1000 genomes]
rs12035105	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12037210	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12041114	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12406352	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12406500	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1461014	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461023	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1547155	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1547156	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16846113	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16846206	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1886639	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925340	0.94[AMR][1000 genomes]
rs2017323	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2422433	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916365	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4916368	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60043192	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61828887	0.81[ASN][1000 genomes]
rs61828888	0.81[ASN][1000 genomes]
rs6425248	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425249	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675929	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6687872	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6702320	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72709325	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs728908	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs745573	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs745574	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7520814	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs898657	0.85[AMR][1000 genomes]
rs898658	0.82[AMR][1000 genomes]
rs898659	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173516600-173523600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:173517200-173523000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:173518000-173523800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:173518200-173523600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:173518400-173523400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:173518600-173523000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:173519000-173523600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:173520000-173523600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr1:173520400-173523400	Weak transcription	HUVEC	blood vessel
10	chr1:173520600-173523000	Weak transcription	K562	blood
11	chr1:173521000-173523400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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