Variant report

Variant	rs11582670
Chromosome Location	chr1:173543939-173543940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1024266	0.83[AMR][1000 genomes]
rs10798283	0.86[AMR][1000 genomes]
rs10798290	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10798291	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10798292	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10912625	0.83[AMR][1000 genomes]
rs10912626	0.83[AMR][1000 genomes]
rs10912634	0.86[AMR][1000 genomes]
rs10912635	0.84[AMR][1000 genomes]
rs10912636	0.84[AMR][1000 genomes]
rs10912642	0.82[AMR][1000 genomes]
rs10912651	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10912656	0.81[AMR][1000 genomes]
rs12026427	0.86[AMR][1000 genomes]
rs12026637	0.83[AMR][1000 genomes]
rs12026677	0.83[AMR][1000 genomes]
rs12026993	0.83[AMR][1000 genomes]
rs12027451	0.83[AMR][1000 genomes]
rs12027495	0.83[AMR][1000 genomes]
rs12032386	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12032790	0.83[ASN][1000 genomes]
rs12033623	0.86[AMR][1000 genomes]
rs12034341	0.86[AMR][1000 genomes]
rs12035105	0.86[AMR][1000 genomes]
rs12037210	0.83[AMR][1000 genomes]
rs12039524	0.80[ASN][1000 genomes]
rs12041114	0.84[AMR][1000 genomes]
rs12041743	0.83[ASN][1000 genomes]
rs12042027	0.83[ASN][1000 genomes]
rs12406352	0.83[AMR][1000 genomes]
rs12406500	0.86[AMR][1000 genomes]
rs1461023	0.86[AMR][1000 genomes]
rs1547156	0.86[AMR][1000 genomes]
rs16846113	0.86[AMR][1000 genomes]
rs16846206	0.83[AMR][1000 genomes]
rs2017323	0.83[AMR][1000 genomes]
rs2422433	0.82[AMR][1000 genomes]
rs2901747	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2901748	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34754266	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4336887	0.85[AMR][1000 genomes]
rs4916365	0.83[AMR][1000 genomes]
rs4916368	0.86[AMR][1000 genomes]
rs60043192	0.83[AMR][1000 genomes]
rs61828911	0.81[ASN][1000 genomes]
rs61828913	0.83[ASN][1000 genomes]
rs61828914	0.82[ASN][1000 genomes]
rs6425251	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6675929	0.86[AMR][1000 genomes]
rs6687872	0.81[AMR][1000 genomes]
rs6702320	0.86[AMR][1000 genomes]
rs72709325	0.86[AMR][1000 genomes]
rs72709357	0.80[ASN][1000 genomes]
rs728908	0.86[AMR][1000 genomes]
rs745573	0.86[AMR][1000 genomes]
rs745574	0.86[AMR][1000 genomes]
rs7552723	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs898657	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898658	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898659	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3452578	chr1:173543827-173545104	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3452579	chr1:173543827-173545104	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173543200-173547200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:173543800-173544200	Weak transcription	A549	lung

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