Variant report

Variant	rs898657
Chromosome Location	chr1:173542017-173542018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173539981..173542937-chr1:173592354..173595230,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1024266	0.83[AMR][1000 genomes]
rs1031751	1.00[YRI][hapmap]
rs10798283	0.86[AMR][1000 genomes]
rs10798290	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10798291	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10798292	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10912624	0.82[CEU][hapmap]
rs10912625	0.83[AMR][1000 genomes]
rs10912626	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs10912634	0.86[AMR][1000 genomes]
rs10912635	0.84[AMR][1000 genomes]
rs10912636	0.84[AMR][1000 genomes]
rs10912641	0.86[CEU][hapmap]
rs10912642	0.82[AMR][1000 genomes]
rs10912643	0.87[CEU][hapmap]
rs10912651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10912656	0.88[MKK][hapmap];0.81[AMR][1000 genomes]
rs10912671	0.85[CHB][hapmap]
rs11582670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026427	0.87[CEU][hapmap];0.86[AMR][1000 genomes]
rs12026637	0.83[AMR][1000 genomes]
rs12026677	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs12026993	0.83[AMR][1000 genomes]
rs12027451	0.83[AMR][1000 genomes]
rs12027495	0.83[AMR][1000 genomes]
rs12032386	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12032790	0.83[ASN][1000 genomes]
rs12033623	0.86[AMR][1000 genomes]
rs12034341	0.86[AMR][1000 genomes]
rs12035105	0.86[AMR][1000 genomes]
rs12037210	0.82[CEU][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.83[AMR][1000 genomes]
rs12039524	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12041114	0.84[AMR][1000 genomes]
rs12041743	0.83[ASN][1000 genomes]
rs12042027	0.83[ASN][1000 genomes]
rs12082131	0.84[CHB][hapmap]
rs12406352	0.83[AMR][1000 genomes]
rs12406500	0.86[AMR][1000 genomes]
rs1461014	0.87[CEU][hapmap]
rs1461023	0.86[AMR][1000 genomes]
rs1547156	0.86[AMR][1000 genomes]
rs16846113	0.86[AMR][1000 genomes]
rs16846206	0.83[AMR][1000 genomes]
rs1886639	0.87[CEU][hapmap]
rs2017323	0.83[AMR][1000 genomes]
rs2273366	0.85[CHB][hapmap]
rs2422433	0.82[AMR][1000 genomes]
rs2901747	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2901748	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34754266	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4336887	0.85[AMR][1000 genomes]
rs4916365	0.83[AMR][1000 genomes]
rs4916368	0.86[AMR][1000 genomes]
rs60043192	0.83[AMR][1000 genomes]
rs61828911	0.81[ASN][1000 genomes]
rs61828913	0.83[ASN][1000 genomes]
rs61828914	0.82[ASN][1000 genomes]
rs6413827	0.85[CHB][hapmap]
rs6425251	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6675929	0.86[AMR][1000 genomes]
rs6681766	0.95[CHB][hapmap]
rs6687872	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs6696680	0.85[CHB][hapmap]
rs6702320	0.86[AMR][1000 genomes]
rs72709325	0.86[AMR][1000 genomes]
rs72709357	0.80[ASN][1000 genomes]
rs728908	0.86[AMR][1000 genomes]
rs745573	0.86[AMR][1000 genomes]
rs745574	0.86[AMR][1000 genomes]
rs7514556	0.85[CHB][hapmap]
rs7541082	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7552723	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs898658	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898659	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173540600-173542800	Weak transcription	HSMMtube	muscle
2	chr1:173542000-173543000	Enhancers	A549	lung

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