Variant report

Variant	rs12041114
Chromosome Location	chr1:173500176-173500177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10082296	0.88[YRI][hapmap]
rs10159349	1.00[YRI][hapmap]
rs1024266	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10399838	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10494490	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10737301	1.00[CHB][hapmap]
rs10737303	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10753078	0.95[CHB][hapmap]
rs10798283	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798284	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798285	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798290	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs10912624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10912625	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912632	0.91[AMR][1000 genomes]
rs10912634	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912641	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912642	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912643	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912651	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs11582670	0.84[AMR][1000 genomes]
rs12026427	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12026637	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026993	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12027451	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12027495	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12033623	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12034341	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034533	0.91[AMR][1000 genomes]
rs12035105	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12065426	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12077271	0.81[ASN][1000 genomes]
rs12406352	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12406500	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565753	0.81[ASN][1000 genomes]
rs12744504	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12745058	0.81[ASN][1000 genomes]
rs1461014	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1461023	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547155	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547156	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16846113	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16846206	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1886639	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1925340	0.91[AMR][1000 genomes]
rs2017323	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2422433	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35607505	0.81[ASN][1000 genomes]
rs3934575	1.00[CHB][hapmap]
rs3934576	1.00[CHB][hapmap]
rs4244195	1.00[CHB][hapmap]
rs4294450	1.00[CHB][hapmap]
rs4310474	0.95[CHB][hapmap]
rs4336887	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4539167	1.00[CHB][hapmap]
rs4916365	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4916368	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60043192	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6425248	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6425249	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6425251	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs6425252	1.00[YRI][hapmap]
rs6660804	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6665497	0.89[YRI][hapmap]
rs6671141	0.85[CHB][hapmap]
rs6675929	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681766	0.80[CHB][hapmap]
rs6687872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696443	0.81[ASN][1000 genomes]
rs6699094	0.95[CHB][hapmap]
rs6702320	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72709325	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728908	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7413754	0.81[ASN][1000 genomes]
rs745573	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745574	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516544	0.81[ASN][1000 genomes]
rs7518933	1.00[YRI][hapmap]
rs7520814	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7524592	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7525100	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7530469	1.00[CHB][hapmap]
rs7532991	1.00[YRI][hapmap]
rs7540898	1.00[YRI][hapmap]
rs7541082	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs7549074	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs898657	0.84[AMR][1000 genomes]
rs898658	0.82[AMR][1000 genomes]
rs898659	0.82[AMR][1000 genomes]
rs912767	1.00[CHB][hapmap];0.91[JPT][hapmap]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173495000-173500200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:173496400-173501200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:173496400-173501800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:173496800-173500400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:173496800-173501200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:173496800-173501600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:173497000-173500400	Weak transcription	Adipose Nuclei	Adipose
8	chr1:173497200-173500400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:173497400-173500400	Weak transcription	Brain Substantia Nigra	brain
10	chr1:173497600-173500400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:173498600-173501000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:173498600-173501400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr1:173498800-173501000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr1:173498800-173501000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:173499000-173501600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:173499200-173500800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:173499200-173501400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:173499400-173500200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:173499400-173501200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr1:173499400-173501200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr1:173499600-173501000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:173499800-173500600	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:173499800-173500600	Enhancers	HSMMtube	muscle
24	chr1:173499800-173500800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:173499800-173500800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:173499800-173501000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr1:173499800-173501200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr1:173499800-173501400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:173500000-173500200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr1:173500000-173500200	Enhancers	Brain Anterior Caudate	brain
31	chr1:173500000-173500600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:173500000-173500800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:173500000-173500800	Enhancers	Brain Germinal Matrix	brain
34	chr1:173500000-173501400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:173500000-173501600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr1:173500000-173501600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr1:173500000-173501600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:173500000-173501600	Enhancers	Colon Smooth Muscle	Colon

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