Variant report

Variant	rs6665497
Chromosome Location	chr1:173571398-173571399
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082296	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10158274	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159349	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13313018	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13374735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376081	1.00[AMR][1000 genomes]
rs13376339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376392	1.00[AMR][1000 genomes]
rs13376447	1.00[AMR][1000 genomes]
rs34683148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35052032	1.00[AMR][1000 genomes]
rs35133735	1.00[AMR][1000 genomes]
rs6425252	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6695916	1.00[AMR][1000 genomes]
rs6703355	1.00[AMR][1000 genomes]
rs7349122	1.00[ASW][hapmap];1.00[LWK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518933	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs7532991	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs7536930	0.83[AFR][1000 genomes]
rs7540898	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs9286893	1.00[AMR][1000 genomes]
rs9425412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425417	1.00[AMR][1000 genomes]
rs9425732	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425733	0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425737	1.00[ASW][hapmap];1.00[LWK][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs9425739	1.00[AMR][1000 genomes]
rs9425743	1.00[AMR][1000 genomes]
rs9425744	1.00[AMR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173570600-173573000	Enhancers	HMEC	breast
2	chr1:173570800-173571400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:173570800-173572000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:173570800-173572400	Enhancers	K562	blood
5	chr1:173571000-173572000	Enhancers	Ovary	ovary
6	chr1:173571000-173572000	Enhancers	Spleen	Spleen
7	chr1:173571200-173571400	Enhancers	GM12878-XiMat	blood

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