The 2.0 version of rSNPBase

Variant report

Variant rs13376447
Chromosome Location chr1:173443273-173443274
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173430400-173444400 Weak transcription Right Ventricle heart
2 chr1:173430600-173444400 Weak transcription Rectal Smooth Muscle rectum
3 chr1:173430800-173445000 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr1:173431000-173444400 Weak transcription Left Ventricle heart
5 chr1:173433200-173444200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:173438200-173445000 Weak transcription Primary B cells from cord blood blood
7 chr1:173440000-173444400 Weak transcription Monocytes-CD14+_RO01746 blood
8 chr1:173440200-173443600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:173440200-173444000 Weak transcription Fetal Muscle Leg muscle
10 chr1:173440400-173444400 Weak transcription Fetal Stomach stomach
11 chr1:173440400-173444800 Weak transcription Primary B cells from peripheral blood blood
12 chr1:173440400-173444800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:173440400-173445200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr1:173440600-173445200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:173440600-173445200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:173440600-173445800 Weak transcription Spleen Spleen
17 chr1:173441000-173444400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:173441000-173445000 Weak transcription H9 Cell Line embryonic stem cell
19 chr1:173441200-173445000 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr1:173441200-173445000 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:173441400-173443800 Weak transcription Fetal Muscle Trunk muscle
22 chr1:173441400-173444400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:173441400-173444400 Weak transcription Dnd41 blood
24 chr1:173441400-173445200 Weak transcription Primary hematopoietic stem cells blood
25 chr1:173441600-173445200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr1:173441800-173443400 Weak transcription iPS-15b Cell Line embryonic stem cell
27 chr1:173441800-173444800 Weak transcription H1 Cell Line embryonic stem cell
28 chr1:173441800-173444800 Enhancers Primary T helper cells PMA-I stimulated --
29 chr1:173442400-173443400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:173442400-173443400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:173442400-173443400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:173442400-173443400 Flanking Active TSS NH-A brain
33 chr1:173442400-173443400 Flanking Active TSS NHLF lung
34 chr1:173442400-173443600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:173442400-173443600 Flanking Active TSS HepG2 liver
36 chr1:173442400-173444000 Enhancers NHDF-Ad bronchial
37 chr1:173442400-173444200 Enhancers Liver Liver
38 chr1:173442400-173444200 Enhancers Rectal Mucosa Donor 31 rectum
39 chr1:173442400-173444200 Enhancers HSMM muscle
40 chr1:173442400-173444600 Enhancers HMEC breast
41 chr1:173442400-173444800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
42 chr1:173442400-173445000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:173442400-173445200 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr1:173442400-173445200 Enhancers Fetal Intestine Large intestine
45 chr1:173442400-173445200 Enhancers Fetal Intestine Small intestine
46 chr1:173442400-173445200 Enhancers Sigmoid Colon Sigmoid Colon
47 chr1:173442600-173443400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr1:173442600-173443800 Enhancers Aorta Aorta
49 chr1:173442600-173444200 Weak transcription HUES64 Cell Line embryonic stem cell
50 chr1:173442600-173444400 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015