Variant report

Variant	rs13375569
Chromosome Location	chr1:173624727-173624728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10082296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10158274	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13313018	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13374735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376081	1.00[AMR][1000 genomes]
rs13376339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376392	1.00[AMR][1000 genomes]
rs13376447	1.00[AMR][1000 genomes]
rs2227605	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227621	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34683148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35052032	1.00[AMR][1000 genomes]
rs35133735	1.00[AMR][1000 genomes]
rs4650988	1.00[AMR][1000 genomes]
rs4652416	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425252	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6695916	1.00[AMR][1000 genomes]
rs6703355	1.00[AMR][1000 genomes]
rs7349122	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518933	1.00[AMR][1000 genomes]
rs7532991	1.00[AMR][1000 genomes]
rs7536930	0.83[AFR][1000 genomes]
rs7540898	1.00[AMR][1000 genomes]
rs9286893	1.00[AMR][1000 genomes]
rs9425412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425417	1.00[AMR][1000 genomes]
rs9425429	1.00[AMR][1000 genomes]
rs9425432	1.00[AMR][1000 genomes]
rs9425732	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425733	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425737	1.00[AMR][1000 genomes]
rs9425739	1.00[AMR][1000 genomes]
rs9425743	1.00[AMR][1000 genomes]
rs9425744	1.00[AMR][1000 genomes]
rs9425767	1.00[AMR][1000 genomes]
rs9425769	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173607800-173624800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:173609000-173625000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:173613600-173629800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:173623600-173637400	Weak transcription	Brain Anterior Caudate	brain
5	chr1:173624000-173625000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:173624400-173625600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:173624600-173626400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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