Variant report

Variant	rs10128064
Chromosome Location	chr1:173572586-173572587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr1:173572386-173572774	K562	blood:	n/a	n/a
2	IRF1	chr1:173572349-173572626	K562	blood:	n/a	chr1:173572391-173572407
3	IRF1	chr1:173572054-173572782	K562	blood:	n/a	chr1:173572391-173572407
4	TEAD4	chr1:173572119-173572822	K562	blood:	n/a	n/a
5	MAX	chr1:173572118-173572716	K562	blood:	n/a	n/a
6	SPI1	chr1:173572472-173572766	K562	blood:	n/a	n/a
7	JUND	chr1:173572124-173572695	K562	blood:	n/a	n/a
8	HEY1	chr1:173572415-173572947	K562	blood:	n/a	n/a
9	ZNF143	chr1:173572427-173572648	K562	blood:	n/a	n/a
10	MAFK	chr1:173572172-173572871	K562	blood:	n/a	chr1:173572406-173572417 chr1:173572406-173572417 chr1:173572406-173572421
11	SPI1	chr1:173572491-173572721	K562	blood:	n/a	n/a
12	CBX3	chr1:173572090-173572832	K562	blood:	n/a	n/a
13	GATA2	chr1:173572428-173572867	K562	blood:	n/a	n/a
14	POLR2A	chr1:173572500-173572689	K562	blood:	n/a	n/a
15	ATF1	chr1:173572191-173572734	K562	blood:	n/a	n/a
16	IRF1	chr1:173572206-173572727	K562	blood:	n/a	chr1:173572391-173572407
17	MYC	chr1:173572343-173572722	K562	blood:	n/a	n/a
18	EP300	chr1:173572182-173572705	K562	blood:	n/a	n/a
19	MAFF	chr1:173572175-173572606	K562	blood:	n/a	chr1:173572404-173572422
20	GATA3	chr1:173572458-173572764	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
SLC9C2	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10158274	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13313018	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13374735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376081	1.00[AMR][1000 genomes]
rs13376339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376392	1.00[AMR][1000 genomes]
rs13376447	1.00[AMR][1000 genomes]
rs34683148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35052032	1.00[AMR][1000 genomes]
rs35133735	1.00[AMR][1000 genomes]
rs6425252	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6695916	1.00[AMR][1000 genomes]
rs6703355	1.00[AMR][1000 genomes]
rs7349122	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518933	1.00[AMR][1000 genomes]
rs7532991	1.00[AMR][1000 genomes]
rs7536930	0.83[AFR][1000 genomes]
rs7540898	1.00[AMR][1000 genomes]
rs9286893	1.00[AMR][1000 genomes]
rs9425412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425417	1.00[AMR][1000 genomes]
rs9425732	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425733	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425737	1.00[AMR][1000 genomes]
rs9425739	1.00[AMR][1000 genomes]
rs9425743	1.00[AMR][1000 genomes]
rs9425744	1.00[AMR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173570600-173573000	Enhancers	HMEC	breast
2	chr1:173572000-173572800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:173572000-173572800	Enhancers	Fetal Heart	heart
4	chr1:173572000-173572800	Enhancers	Fetal Muscle Leg	muscle
5	chr1:173572000-173573000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:173572000-173573000	Active TSS	Right Atrium	heart
7	chr1:173572200-173572600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr1:173572200-173572600	Active TSS	Stomach Mucosa	stomach
9	chr1:173572200-173572800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:173572200-173572800	Active TSS	Adipose Nuclei	Adipose
11	chr1:173572200-173572800	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr1:173572200-173572800	Active TSS	Left Ventricle	heart
13	chr1:173572200-173572800	Active TSS	Pancreas	Pancrea
14	chr1:173572200-173572800	Enhancers	Psoas Muscle	Psoas
15	chr1:173572200-173572800	Flanking Active TSS	HUVEC	blood vessel
16	chr1:173572200-173572800	Active TSS	Monocytes-CD14+_RO01746	blood
17	chr1:173572200-173573000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr1:173572200-173573000	Active TSS	Duodenum Mucosa	Duodenum
19	chr1:173572200-173574000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr1:173572400-173572800	Active TSS	Aorta	Aorta
21	chr1:173572400-173572800	Active TSS	Liver	Liver
22	chr1:173572400-173572800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr1:173572400-173572800	Active TSS	Stomach Smooth Muscle	stomach
24	chr1:173572400-173572800	Flanking Active TSS	K562	blood
25	chr1:173572400-173572800	Active TSS	NHEK	skin
26	chr1:173572400-173573000	Active TSS	Ovary	ovary

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