Variant report

Variant	rs35052032
Chromosome Location	chr1:173450457-173450458
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173450429..173453929-chr1:173454032..173458436,7	MCF-7	breast:
2	chr1:173443316..173450639-chr1:173791413..173797919,15	K562	blood:
3	chr1:173443428..173450639-chr1:173791407..173797248,10	K562	blood:

Variant related genes	Relation type
ENSG00000117593	Chromatin interaction
ENSG00000120334	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10082296	1.00[AMR][1000 genomes]
rs10128064	1.00[AMR][1000 genomes]
rs10158274	1.00[AMR][1000 genomes]
rs10159349	1.00[AMR][1000 genomes]
rs12239406	1.00[AMR][1000 genomes]
rs13313018	1.00[AMR][1000 genomes]
rs13374735	1.00[AMR][1000 genomes]
rs13375569	1.00[AMR][1000 genomes]
rs13376081	1.00[AMR][1000 genomes]
rs13376339	1.00[AMR][1000 genomes]
rs13376392	1.00[AMR][1000 genomes]
rs13376447	1.00[AMR][1000 genomes]
rs34683148	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35133735	1.00[AMR][1000 genomes]
rs6425252	1.00[AMR][1000 genomes]
rs6656810	1.00[AMR][1000 genomes]
rs6665497	1.00[AMR][1000 genomes]
rs6695916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6703355	1.00[AMR][1000 genomes]
rs7518933	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532991	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540898	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173447800-173452800	Weak transcription	Pancreas	Pancrea
2	chr1:173448000-173450600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:173448000-173451400	Weak transcription	Colonic Mucosa	Colon
4	chr1:173448000-173477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:173448400-173450600	Weak transcription	Fetal Brain Male	brain
6	chr1:173448600-173459800	Strong transcription	Fetal Muscle Trunk	muscle
7	chr1:173448800-173450600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:173448800-173451600	Genic enhancers	HepG2	liver
9	chr1:173448800-173458200	Strong transcription	Primary B cells from cord blood	blood
10	chr1:173448800-173459400	Weak transcription	Stomach Mucosa	stomach
11	chr1:173448800-173460000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:173449000-173450600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:173449000-173450600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:173449000-173450600	Genic enhancers	Dnd41	blood
15	chr1:173449000-173454400	Weak transcription	Small Intestine	intestine
16	chr1:173449000-173458600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:173449000-173458800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:173449000-173458800	Strong transcription	Fetal Intestine Large	intestine
19	chr1:173449000-173459400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:173449000-173459400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:173449200-173456400	Strong transcription	Placenta	Placenta
22	chr1:173449200-173456600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:173449200-173457000	Strong transcription	Fetal Kidney	kidney
24	chr1:173449200-173458800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:173449200-173459600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:173449400-173450600	Weak transcription	Fetal Lung	lung
27	chr1:173449400-173450600	Weak transcription	HSMMtube	muscle
28	chr1:173449400-173451000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr1:173449400-173451000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr1:173449400-173456200	Weak transcription	Fetal Heart	heart
31	chr1:173449400-173457800	Strong transcription	NHDF-Ad	bronchial
32	chr1:173449400-173458000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:173449400-173458600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:173449400-173458800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr1:173449400-173459200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:173449600-173450600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr1:173449600-173450600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr1:173449600-173450600	Weak transcription	Right Atrium	heart
39	chr1:173449600-173450600	Weak transcription	Right Ventricle	heart
40	chr1:173449600-173450800	Genic enhancers	Adipose Nuclei	Adipose
41	chr1:173449600-173451000	Genic enhancers	Liver	Liver
42	chr1:173449600-173451000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
43	chr1:173449600-173451000	Genic enhancers	K562	blood
44	chr1:173449600-173453000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:173449600-173457400	Strong transcription	NHEK	skin
46	chr1:173449600-173458000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:173449600-173458600	Strong transcription	Primary hematopoietic stem cells	blood
48	chr1:173449600-173458600	Strong transcription	HMEC	breast
49	chr1:173449600-173458600	Strong transcription	HUVEC	blood vessel
50	chr1:173449600-173458600	Strong transcription	NH-A	brain

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