Variant report

Variant	rs10494490
Chromosome Location	chr1:173516903-173516904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1024266	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10399838	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10737303	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10753083	0.83[AFR][1000 genomes]
rs10798283	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798284	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798285	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912624	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912625	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912626	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912634	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912635	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912636	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912641	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912642	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912643	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12026427	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12026637	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12026677	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12026993	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12027451	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12027495	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12033623	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12034341	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12035105	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12037210	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12041114	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12406352	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12406500	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461014	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1461023	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1547155	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547156	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846113	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846206	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886639	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2017323	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422433	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4336887	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916365	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916368	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60043192	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61828886	0.81[ASN][1000 genomes]
rs6425248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425249	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675929	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6687872	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6702320	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709325	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs728908	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs745573	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs745574	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7520814	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173516600-173523600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:173516800-173517400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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