Variant report

Variant	rs10753083
Chromosome Location	chr1:173523580-173523581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYA	chr1:173523285-173523667	K562	blood:	n/a	n/a
2	CHD2	chr1:173523318-173523618	K562	blood:	n/a	n/a
3	TEAD4	chr1:173523134-173523627	K562	blood:	n/a	n/a
4	RCOR1	chr1:173523169-173523613	K562	blood:	n/a	n/a
5	TBP	chr1:173523407-173523589	K562	blood:	n/a	n/a
6	NFYB	chr1:173523212-173523602	K562	blood:	n/a	n/a
7	JUND	chr1:173523568-173524208	HCT-116	colon:	n/a	chr1:173523886-173523897 chr1:173524155-173524167
8	IRF1	chr1:173523223-173523597	K562	blood:	n/a	n/a
9	SP1	chr1:173523544-173524167	HCT-116	colon:	n/a	n/a
10	CEBPB	chr1:173523317-173523585	K562	blood:	n/a	n/a
11	SPI1	chr1:173523251-173523678	HL-60	blood:	n/a	n/a
12	EP300	chr1:173523264-173523600	K562	blood:	n/a	n/a
13	JUND	chr1:173523246-173523584	K562	blood:	n/a	n/a
14	FOSL1	chr1:173523570-173524177	HCT-116	colon:	n/a	chr1:173524155-173524167

Variant related genes	Relation type
ENSG00000238272	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10494490	0.83[AFR][1000 genomes]
rs10753082	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10912624	0.84[YRI][hapmap]
rs10912633	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10912641	0.80[YRI][hapmap]
rs10912643	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs10912650	0.84[AMR][1000 genomes]
rs12075314	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12080722	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1359460	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1461014	0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs1461022	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1461024	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1461025	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547154	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1570813	0.82[AMR][1000 genomes]
rs1886638	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1886639	0.80[YRI][hapmap]
rs4382766	0.82[YRI][hapmap]
rs4405161	1.00[JPT][hapmap]
rs4472784	1.00[JPT][hapmap]
rs4573551	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4916366	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4916367	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4916371	0.82[AMR][1000 genomes]
rs6425248	0.86[AFR][1000 genomes]
rs7314	0.88[YRI][hapmap]
rs7535963	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7540065	0.86[YRI][hapmap]
rs7551305	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs912768	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9425411	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173516600-173523600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:173518000-173523800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:173518200-173523600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:173519000-173523600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr1:173520000-173523600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr1:173523000-173523800	Enhancers	K562	blood
7	chr1:173523200-173523600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:173523200-173524400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:173523200-173525200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:173523200-173525400	Enhancers	HMEC	breast
11	chr1:173523200-173525400	Enhancers	NHEK	skin
12	chr1:173523200-173525600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:173523200-173525600	Enhancers	Hela-S3	cervix
14	chr1:173523400-173523600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:173523400-173524000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:173523400-173525400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:173523400-173525400	Enhancers	HUVEC	blood vessel

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