Variant report

Variant	rs12075314
Chromosome Location	chr1:173491947-173491948
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173490173..173492783-chr1:173495928..173498517,3	K562	blood:
2	chr1:173485631..173487913-chr1:173488725..173492186,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10753082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10753083	0.96[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10912624	0.80[YRI][hapmap]
rs10912633	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912643	0.80[YRI][hapmap]
rs10912650	0.86[AMR][1000 genomes]
rs12077271	0.86[AFR][1000 genomes]
rs12080722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565753	0.83[AFR][1000 genomes]
rs12745058	0.89[AFR][1000 genomes]
rs1359460	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461022	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461024	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461025	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1547154	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570813	0.84[AMR][1000 genomes]
rs1886638	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4382766	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs4405161	1.00[JPT][hapmap]
rs4472784	1.00[JPT][hapmap]
rs4573551	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4611	0.86[AFR][1000 genomes]
rs4916366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916371	0.84[AMR][1000 genomes]
rs7314	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7516544	0.84[AFR][1000 genomes]
rs7535963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540065	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7551305	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912768	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425411	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9425724	0.84[AFR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173488400-173495200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:173488400-173496000	Weak transcription	Right Atrium	heart
3	chr1:173488400-173496800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:173490200-173493000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:173491000-173496400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:173491200-173492000	Enhancers	Placenta	Placenta
7	chr1:173491800-173493200	Enhancers	Liver	Liver

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