Variant report
Variant | rs7513933 |
---|---|
Chromosome Location | chr1:173623302-173623303 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10798290 | 0.81[ASN][1000 genomes] |
rs10912660 | 0.83[AMR][1000 genomes] |
rs12032386 | 0.81[ASN][1000 genomes] |
rs12032790 | 0.80[ASN][1000 genomes] |
rs12039524 | 0.83[ASN][1000 genomes] |
rs12041743 | 0.80[ASN][1000 genomes] |
rs12042027 | 0.80[ASN][1000 genomes] |
rs12065988 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12067170 | 0.83[AMR][1000 genomes] |
rs12075071 | 0.83[AMR][1000 genomes] |
rs12561820 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12568477 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2422467 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs28825469 | 0.86[AFR][1000 genomes];0.80[AMR][1000 genomes] |
rs34754266 | 0.81[ASN][1000 genomes] |
rs56138893 | 0.91[EUR][1000 genomes] |
rs57592568 | 0.83[AMR][1000 genomes] |
rs58287165 | 0.87[EUR][1000 genomes] |
rs59858609 | 0.88[EUR][1000 genomes] |
rs61826760 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs61826764 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61826765 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61826766 | 0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs61826768 | 0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs61826769 | 0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs61826805 | 0.89[EUR][1000 genomes] |
rs61826806 | 0.88[EUR][1000 genomes] |
rs61826809 | 0.89[EUR][1000 genomes] |
rs61826810 | 0.86[EUR][1000 genomes] |
rs61828913 | 0.80[ASN][1000 genomes] |
rs61828914 | 0.81[ASN][1000 genomes] |
rs61828922 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs61828923 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6674589 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6681766 | 0.89[EUR][1000 genomes] |
rs72709357 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs727924 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7542910 | 0.83[AMR][1000 genomes] |
rs969029 | 0.83[AMR][1000 genomes] |
rs9803671 | 0.80[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012384 | chr1:173614816-173974426 | Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 294 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:173607400-173624600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
2 | chr1:173607800-173624800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
3 | chr1:173609000-173625000 | Weak transcription | H9 Cell Line | embryonic stem cell |
4 | chr1:173613600-173629800 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |