Variant report

Variant	rs969029
Chromosome Location	chr1:173614371-173614372
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173613329..173616073-chr1:173616452..173618767,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10798295	0.85[ASW][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs10912656	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs10912660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12057778	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12065988	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12067170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12075071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12092383	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12561820	0.95[CEU][hapmap]
rs57592568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6674589	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6702835	0.82[CHB][hapmap]
rs727924	0.84[AMR][1000 genomes]
rs7314	0.82[CHB][hapmap];0.86[CHD][hapmap];0.94[MEX][hapmap]
rs7365380	0.89[ASN][1000 genomes]
rs7513933	0.83[AMR][1000 genomes]
rs7540065	0.82[CHB][hapmap];0.86[CHD][hapmap];0.94[MEX][hapmap]
rs7542910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7552939	0.85[ASW][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.81[AFR][1000 genomes]
rs9803671	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs969029	SERPINC1	cis	multi-tissue	Pritchard
rs969029		cis	Lymphoblastoid	GTEx
rs969029	CENPL	cis	lymphoblastoid	seeQTL
rs969029	GPR52	cis	parietal	SCAN
rs969029	DARS2	cis	cerebellum	SCAN
rs969029	SLC9A11	cis	parietal	SCAN
rs969029	PRDX6	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173607400-173624600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:173607800-173624800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:173609000-173625000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:173611200-173619000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:173613600-173629800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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