Variant report

Variant	rs7365380
Chromosome Location	chr1:173625710-173625711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10798295	0.86[CHB][hapmap]
rs10912656	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs10912660	0.89[ASN][1000 genomes]
rs12067170	0.87[ASN][1000 genomes]
rs12075071	0.90[ASN][1000 genomes]
rs12092383	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs57592568	0.90[ASN][1000 genomes]
rs6702835	0.82[CHB][hapmap]
rs7314	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs7540065	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs7542910	0.91[ASN][1000 genomes]
rs7552939	0.86[CHB][hapmap]
rs969029	0.89[ASN][1000 genomes]
rs9803671	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7365380	ANKRD36BP1	cis	cerebellum	SCAN
rs7365380	SLC9A11	cis	parietal	SCAN
rs7365380	PRDX6	cis	parietal	SCAN
rs7365380	GPR52	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173613600-173629800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:173623600-173637400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:173624600-173626400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:173624800-173625800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr1:173624800-173626000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr1:173624800-173626000	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:173624800-173626200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:173624800-173626400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr1:173625000-173625800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:173625200-173626600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:173625200-173627000	Weak transcription	Fetal Kidney	kidney
12	chr1:173625400-173638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:173625600-173625800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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