Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173605287..173609267-chr1:173609597..173614362,5	K562	blood:
2	chr1:173605538..173609079-chr1:173609597..173613461,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLHL20-1	chr1:173605966-173606273	ENSG00000232113.1
2	lnc-KLHL20-1	chr1:173605966-173606330	NONHSAT007643

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10798295	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10912656	0.95[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs10912660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12057778	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12065988	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12075071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12092383	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12561820	1.00[CEU][hapmap]
rs57592568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6674589	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6702835	0.82[CHB][hapmap]
rs727924	0.84[AMR][1000 genomes]
rs7314	0.82[CHB][hapmap]
rs7365380	0.87[ASN][1000 genomes]
rs7513933	0.83[AMR][1000 genomes]
rs7540065	0.82[CHB][hapmap]
rs7542910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7552939	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes]
rs969029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9803671	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12067170		cis	Lymphoblastoid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173598000-173607000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:173604800-173606800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:173606200-173606400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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