Variant report

Variant	rs12092383
Chromosome Location	chr1:173576720-173576721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10798282	0.81[CHB][hapmap]
rs10798295	0.85[ASW][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10912617	0.81[CHB][hapmap]
rs10912618	0.81[CHB][hapmap]
rs10912656	1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs10912660	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12057778	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12067170	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12075071	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12140760	0.81[CHB][hapmap]
rs12561820	0.95[CEU][hapmap]
rs4276950	0.81[CHB][hapmap]
rs4382766	0.81[CHB][hapmap]
rs4916358	0.81[CHB][hapmap]
rs4916362	0.81[CHB][hapmap]
rs57592568	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6425233	0.81[CHB][hapmap]
rs6674589	0.81[AFR][1000 genomes]
rs6688567	0.81[ASN][1000 genomes]
rs6702835	0.86[CHB][hapmap]
rs7314	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs7365380	0.85[ASN][1000 genomes]
rs7537938	0.81[CHB][hapmap]
rs7540065	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs7542910	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7552939	0.85[ASW][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.87[LWK][hapmap];0.81[AFR][1000 genomes]
rs9425718	0.80[CHB][hapmap]
rs969029	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9803671	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12092383		cis	Lymphoblastoid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173573000-173577600	Weak transcription	Right Atrium	heart
2	chr1:173573400-173586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:173574000-173577600	Weak transcription	K562	blood
4	chr1:173575600-173580600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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