Variant report

Variant	rs61826805
Chromosome Location	chr1:173669658-173669659
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173669533..173671406-chr1:173836514..173838083,2	K562	blood:

Variant related genes	Relation type
ENSG00000185278	Chromatin interaction
ENSG00000234741	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10912670	0.89[ASN][1000 genomes]
rs10912671	0.94[ASN][1000 genomes]
rs12065988	0.89[EUR][1000 genomes]
rs12082131	0.94[ASN][1000 genomes]
rs12086229	0.91[ASN][1000 genomes]
rs12561820	0.85[EUR][1000 genomes]
rs12561931	0.89[ASN][1000 genomes]
rs12564699	0.95[ASN][1000 genomes]
rs12565915	0.89[ASN][1000 genomes]
rs12566945	0.95[ASN][1000 genomes]
rs12568477	0.83[EUR][1000 genomes]
rs1322774	0.85[ASN][1000 genomes]
rs16846439	0.85[ASN][1000 genomes]
rs1951625	0.85[ASN][1000 genomes]
rs2067079	0.85[ASN][1000 genomes]
rs2144708	0.89[ASN][1000 genomes]
rs2208850	0.85[ASN][1000 genomes]
rs2273366	0.91[ASN][1000 genomes]
rs2281486	0.85[ASN][1000 genomes]
rs2295366	0.85[ASN][1000 genomes]
rs2422467	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28804123	0.86[ASN][1000 genomes]
rs28825469	0.81[ASN][1000 genomes]
rs3791020	0.85[ASN][1000 genomes]
rs45467799	0.92[ASN][1000 genomes]
rs4558043	0.92[ASN][1000 genomes]
rs55633896	0.89[ASN][1000 genomes]
rs55829688	0.85[ASN][1000 genomes]
rs56019876	0.91[ASN][1000 genomes]
rs56048122	0.91[ASN][1000 genomes]
rs56138893	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369162	0.89[ASN][1000 genomes]
rs56928371	0.92[ASN][1000 genomes]
rs57799150	0.91[ASN][1000 genomes]
rs58287165	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58825445	0.83[ASN][1000 genomes]
rs59858609	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60264384	0.89[ASN][1000 genomes]
rs61826760	0.92[EUR][1000 genomes]
rs61826764	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826765	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826766	0.92[EUR][1000 genomes]
rs61826768	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61826769	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61826806	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826809	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826810	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826812	0.94[ASN][1000 genomes]
rs61826813	0.94[ASN][1000 genomes]
rs61826821	0.91[ASN][1000 genomes]
rs61826856	0.91[ASN][1000 genomes]
rs61826857	0.88[ASN][1000 genomes]
rs61827860	0.91[ASN][1000 genomes]
rs61827861	0.91[ASN][1000 genomes]
rs61827863	0.89[ASN][1000 genomes]
rs61827865	0.88[ASN][1000 genomes]
rs61827867	0.89[ASN][1000 genomes]
rs61827870	0.89[ASN][1000 genomes]
rs61827876	0.87[ASN][1000 genomes]
rs61827877	0.87[ASN][1000 genomes]
rs61827881	0.85[ASN][1000 genomes]
rs61827925	0.85[ASN][1000 genomes]
rs61828922	0.90[EUR][1000 genomes]
rs61828923	0.89[EUR][1000 genomes]
rs6413827	0.94[ASN][1000 genomes]
rs6425253	0.84[ASN][1000 genomes]
rs6425258	0.89[ASN][1000 genomes]
rs6425261	0.85[ASN][1000 genomes]
rs6668702	0.95[ASN][1000 genomes]
rs6673175	0.95[ASN][1000 genomes]
rs6674381	0.88[ASN][1000 genomes]
rs6674589	0.88[EUR][1000 genomes]
rs6681766	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691001	0.85[ASN][1000 genomes]
rs6696680	0.92[ASN][1000 genomes]
rs72709357	0.83[EUR][1000 genomes]
rs727924	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7513933	0.89[EUR][1000 genomes]
rs7514556	0.94[ASN][1000 genomes]
rs7515721	0.89[ASN][1000 genomes]
rs7521884	0.91[ASN][1000 genomes]
rs7530546	0.88[ASN][1000 genomes]
rs7546048	0.89[ASN][1000 genomes]
rs7548171	0.87[ASN][1000 genomes]
rs7552741	0.89[ASN][1000 genomes]
rs9425416	0.89[ASN][1000 genomes]
rs9425745	0.89[ASN][1000 genomes]
rs9425756	0.84[ASN][1000 genomes]
rs9660881	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	nsv1014827	chr1:173653453-173692470	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61826805	CLN5	trans	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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