Variant report

Variant	rs28825469
Chromosome Location	chr1:173658207-173658208
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10912670	0.88[AFR][1000 genomes]
rs10912671	0.87[AFR][1000 genomes]
rs12065988	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2144708	0.87[AFR][1000 genomes]
rs56138893	0.81[ASN][1000 genomes]
rs58287165	0.80[ASN][1000 genomes]
rs59858609	0.82[ASN][1000 genomes]
rs61826805	0.81[ASN][1000 genomes]
rs61826806	0.81[ASN][1000 genomes]
rs61826809	0.81[ASN][1000 genomes]
rs61826810	0.81[ASN][1000 genomes]
rs6674589	0.90[AFR][1000 genomes]
rs6681766	0.81[ASN][1000 genomes]
rs6696680	0.88[AFR][1000 genomes]
rs727924	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7513933	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7515721	0.87[AFR][1000 genomes]
rs9425416	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	nsv1014827	chr1:173653453-173692470	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28825469	SERPINC1	cis	Muscle Skeletal	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173656800-173658600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr1:173657200-173659000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:173657400-173658400	Enhancers	K562	blood
4	chr1:173657400-173659000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:173657800-173658800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:173658000-173658800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:173658000-173659000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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