The 2.0 version of rSNPBase

Variant report

Variant rs28804123
Chromosome Location chr1:173804557-173804558
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173794400-173806800 Weak transcription Spleen Spleen
2 chr1:173794400-173812600 Weak transcription Small Intestine intestine
3 chr1:173794400-173832800 Weak transcription Fetal Heart heart
4 chr1:173794600-173805200 Weak transcription Brain Cingulate Gyrus brain
5 chr1:173794600-173805800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr1:173794600-173805800 Weak transcription NH-A brain
7 chr1:173794600-173806000 Weak transcription HSMMtube muscle
8 chr1:173794600-173808600 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr1:173794600-173809600 Weak transcription Fetal Kidney kidney
10 chr1:173794600-173810600 Weak transcription Ovary ovary
11 chr1:173794600-173812400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:173794600-173812600 Weak transcription Aorta Aorta
13 chr1:173794600-173813000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr1:173794600-173814600 Weak transcription Esophagus oesophagus
15 chr1:173794600-173820600 Weak transcription NHLF lung
16 chr1:173794600-173821800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr1:173794600-173821800 Weak transcription Pancreas Pancrea
18 chr1:173794600-173822000 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr1:173794600-173832000 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr1:173794600-173832000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr1:173794600-173832600 Weak transcription Brain Substantia Nigra brain
22 chr1:173794600-173833800 Weak transcription Stomach Mucosa stomach
23 chr1:173794800-173808200 Weak transcription Fetal Brain Female brain
24 chr1:173794800-173809400 Weak transcription Right Ventricle heart
25 chr1:173794800-173834000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr1:173795000-173806200 Weak transcription Brain Hippocampus Middle brain
27 chr1:173795000-173806400 Weak transcription Fetal Lung lung
28 chr1:173795000-173808600 Weak transcription Colonic Mucosa Colon
29 chr1:173795000-173826200 Weak transcription Psoas Muscle Psoas
30 chr1:173795000-173834600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr1:173795200-173822400 Weak transcription Rectal Smooth Muscle rectum
32 chr1:173795200-173824600 Weak transcription Gastric stomach
33 chr1:173795400-173817400 Weak transcription Fetal Brain Male brain
34 chr1:173795800-173814000 Strong transcription HUES64 Cell Line embryonic stem cell
35 chr1:173796000-173818000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:173796200-173805800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
37 chr1:173796200-173812800 Weak transcription iPS-15b Cell Line embryonic stem cell
38 chr1:173796200-173817800 Strong transcription HUES48 Cell Line embryonic stem cell
39 chr1:173796600-173806800 Weak transcription Thymus Thymus
40 chr1:173797200-173828400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:173797600-173812800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr1:173797800-173815800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:173798400-173811000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr1:173798400-173815600 Strong transcription Dnd41 blood
45 chr1:173798800-173816000 Strong transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:173799200-173813600 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr1:173799400-173806200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr1:173799400-173813400 Strong transcription Primary B cells from cord blood blood
49 chr1:173799400-173814200 Strong transcription Primary T helper naive cells fromperipheralblood blood
50 chr1:173799400-173815800 Strong transcription Placenta Placenta

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Last update: Aug 31, 2015