Variant report

Variant	rs61828923
Chromosome Location	chr1:173585611-173585612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10798290	0.82[ASN][1000 genomes]
rs10798291	0.84[ASN][1000 genomes]
rs10798292	0.84[ASN][1000 genomes]
rs12032386	0.82[ASN][1000 genomes]
rs12032790	0.87[ASN][1000 genomes]
rs12039524	0.90[ASN][1000 genomes]
rs12041743	0.87[ASN][1000 genomes]
rs12042027	0.87[ASN][1000 genomes]
rs12065988	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12561820	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12568477	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2422467	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901747	0.84[ASN][1000 genomes]
rs2901748	0.84[ASN][1000 genomes]
rs34754266	0.82[ASN][1000 genomes]
rs56138893	0.88[EUR][1000 genomes]
rs58287165	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58706672	0.81[ASN][1000 genomes]
rs59858609	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61826760	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61826764	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61826765	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61826766	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61826768	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61826769	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61826805	0.89[EUR][1000 genomes]
rs61826806	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61826809	0.86[EUR][1000 genomes]
rs61826810	0.83[EUR][1000 genomes]
rs61828911	0.85[ASN][1000 genomes]
rs61828913	0.87[ASN][1000 genomes]
rs61828914	0.88[ASN][1000 genomes]
rs61828922	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425251	0.84[ASN][1000 genomes]
rs6674589	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6681766	0.86[EUR][1000 genomes]
rs72709357	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs727924	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7513933	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7552723	0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61828923	CLN5	trans	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173573400-173586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:173582600-173586400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:173585200-173586200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:173585200-173586400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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