Variant report

Variant	rs6425250
Chromosome Location	chr1:173543155-173543156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10127525	1.00[EUR][1000 genomes]
rs10158034	1.00[EUR][1000 genomes]
rs10912652	1.00[EUR][1000 genomes]
rs10912653	1.00[EUR][1000 genomes]
rs10912654	1.00[EUR][1000 genomes]
rs10912655	1.00[EUR][1000 genomes]
rs10912657	1.00[EUR][1000 genomes]
rs10912658	1.00[EUR][1000 genomes]
rs10912659	1.00[EUR][1000 genomes]
rs11484566	1.00[EUR][1000 genomes]
rs12059066	1.00[EUR][1000 genomes]
rs12059068	1.00[EUR][1000 genomes]
rs12059157	1.00[EUR][1000 genomes]
rs12066066	1.00[EUR][1000 genomes]
rs12066494	1.00[EUR][1000 genomes]
rs12067795	1.00[EUR][1000 genomes]
rs12068135	1.00[EUR][1000 genomes]
rs12075679	1.00[EUR][1000 genomes]
rs12076223	1.00[EUR][1000 genomes]
rs12079027	1.00[EUR][1000 genomes]
rs12079161	1.00[EUR][1000 genomes]
rs12081220	1.00[EUR][1000 genomes]
rs12084685	1.00[EUR][1000 genomes]
rs12087885	1.00[EUR][1000 genomes]
rs12087918	1.00[EUR][1000 genomes]
rs12089398	1.00[EUR][1000 genomes]
rs12091486	1.00[EUR][1000 genomes]
rs12093198	1.00[EUR][1000 genomes]
rs12094752	1.00[EUR][1000 genomes]
rs12096136	1.00[EUR][1000 genomes]
rs12164490	1.00[EUR][1000 genomes]
rs13375322	1.00[EUR][1000 genomes]
rs1461016	1.00[EUR][1000 genomes]
rs1461017	1.00[EUR][1000 genomes]
rs1461018	1.00[EUR][1000 genomes]
rs16846278	1.00[EUR][1000 genomes]
rs16846288	1.00[EUR][1000 genomes]
rs2013387	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28767926	1.00[EUR][1000 genomes]
rs56036053	1.00[EUR][1000 genomes]
rs57609710	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58045923	1.00[EUR][1000 genomes]
rs59054917	1.00[EUR][1000 genomes]
rs61554547	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6666475	1.00[EUR][1000 genomes]
rs6668650	1.00[EUR][1000 genomes]
rs6675955	1.00[EUR][1000 genomes]
rs6677292	1.00[EUR][1000 genomes]
rs6678784	1.00[EUR][1000 genomes]
rs6682615	1.00[EUR][1000 genomes]
rs6686370	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700712	1.00[EUR][1000 genomes]
rs7518601	1.00[EUR][1000 genomes]
rs7537369	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803675	1.00[EUR][1000 genomes]
rs9803677	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173542800-173543200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:173543000-173543200	Flanking Active TSS	A549	lung
3	chr1:173543000-173543200	Enhancers	HSMMtube	muscle
4	chr1:173543000-173543400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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