Variant report

Variant	rs10912659
Chromosome Location	chr1:173637388-173637389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10127525	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10158034	0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912652	1.00[EUR][1000 genomes]
rs10912653	1.00[EUR][1000 genomes]
rs10912654	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912655	1.00[EUR][1000 genomes]
rs10912657	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912658	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11484566	1.00[EUR][1000 genomes]
rs12058218	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12059066	0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059068	0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059157	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12065033	0.82[AMR][1000 genomes]
rs12066066	1.00[EUR][1000 genomes]
rs12066494	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067795	1.00[EUR][1000 genomes]
rs12068135	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074044	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12074150	0.82[AMR][1000 genomes]
rs12075335	0.95[AMR][1000 genomes]
rs12075679	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079161	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081220	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083635	0.95[AMR][1000 genomes]
rs12084685	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087885	0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087918	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089398	1.00[EUR][1000 genomes]
rs12091486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093198	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094752	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096136	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164630	0.84[AMR][1000 genomes]
rs13375322	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461017	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461018	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846278	1.00[EUR][1000 genomes]
rs16846288	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1903410	0.95[AMR][1000 genomes]
rs1903411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2013387	1.00[EUR][1000 genomes]
rs28767926	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4652225	1.00[EUR][1000 genomes]
rs56036053	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56157228	0.89[AMR][1000 genomes]
rs57609710	1.00[EUR][1000 genomes]
rs58045923	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59054917	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61554547	1.00[EUR][1000 genomes]
rs6425250	1.00[EUR][1000 genomes]
rs6666475	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668650	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670574	0.82[AMR][1000 genomes]
rs6675955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677292	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678784	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6686370	1.00[EUR][1000 genomes]
rs6690869	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6700712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73033123	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033131	0.95[AMR][1000 genomes]
rs7518601	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537369	1.00[EUR][1000 genomes]
rs9803675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803677	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173623600-173637400	Weak transcription	Brain Anterior Caudate	brain
2	chr1:173625400-173638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:173626000-173637600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:173626200-173637400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:173626200-173637400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:173626400-173637400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:173630600-173646600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:173631000-173638600	Weak transcription	HMEC	breast
9	chr1:173632600-173638600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:173632600-173638600	Weak transcription	HSMM	muscle
11	chr1:173633600-173638200	Weak transcription	Right Atrium	heart
12	chr1:173636200-173638200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:173636200-173638600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:173636200-173638600	Weak transcription	Spleen	Spleen
15	chr1:173636600-173638400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:173636600-173638600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:173637200-173637400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:173637200-173638000	Enhancers	Fetal Brain Female	brain
19	chr1:173637200-173638200	Enhancers	HUES48 Cell Line	embryonic stem cell

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