Variant report
| Variant | rs10912653 |
|---|---|
| Chromosome Location | chr1:173587191-173587192 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:59)
| rs_ID | r2[population] |
|---|---|
| rs10127525 | 1.00[EUR][1000 genomes] |
| rs10158034 | 1.00[EUR][1000 genomes] |
| rs10912652 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10912654 | 1.00[EUR][1000 genomes] |
| rs10912655 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10912657 | 1.00[EUR][1000 genomes] |
| rs10912658 | 1.00[EUR][1000 genomes] |
| rs10912659 | 1.00[EUR][1000 genomes] |
| rs11484566 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12059066 | 1.00[EUR][1000 genomes] |
| rs12059068 | 1.00[EUR][1000 genomes] |
| rs12059157 | 1.00[EUR][1000 genomes] |
| rs12066066 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12066494 | 1.00[EUR][1000 genomes] |
| rs12067795 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12068135 | 1.00[EUR][1000 genomes] |
| rs12075679 | 1.00[EUR][1000 genomes] |
| rs12076223 | 1.00[EUR][1000 genomes] |
| rs12079027 | 1.00[EUR][1000 genomes] |
| rs12079161 | 1.00[EUR][1000 genomes] |
| rs12081137 | 0.84[AFR][1000 genomes] |
| rs12081220 | 1.00[EUR][1000 genomes] |
| rs12084685 | 1.00[EUR][1000 genomes] |
| rs12087885 | 1.00[EUR][1000 genomes] |
| rs12087918 | 1.00[EUR][1000 genomes] |
| rs12089044 | 0.85[AFR][1000 genomes] |
| rs12089398 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12091486 | 1.00[EUR][1000 genomes] |
| rs12093198 | 1.00[EUR][1000 genomes] |
| rs12094752 | 1.00[EUR][1000 genomes] |
| rs12096136 | 1.00[EUR][1000 genomes] |
| rs12164490 | 1.00[EUR][1000 genomes] |
| rs13375322 | 1.00[EUR][1000 genomes] |
| rs1461016 | 1.00[EUR][1000 genomes] |
| rs1461017 | 1.00[EUR][1000 genomes] |
| rs1461018 | 1.00[EUR][1000 genomes] |
| rs16846278 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16846288 | 1.00[EUR][1000 genomes] |
| rs2013387 | 1.00[EUR][1000 genomes] |
| rs28767926 | 1.00[EUR][1000 genomes] |
| rs4652225 | 1.00[EUR][1000 genomes] |
| rs56036053 | 1.00[EUR][1000 genomes] |
| rs57609710 | 1.00[EUR][1000 genomes] |
| rs58045923 | 1.00[EUR][1000 genomes] |
| rs59054917 | 1.00[EUR][1000 genomes] |
| rs61554547 | 1.00[EUR][1000 genomes] |
| rs6425250 | 1.00[EUR][1000 genomes] |
| rs6666475 | 1.00[EUR][1000 genomes] |
| rs6668650 | 1.00[EUR][1000 genomes] |
| rs6675955 | 1.00[EUR][1000 genomes] |
| rs6677292 | 1.00[EUR][1000 genomes] |
| rs6678784 | 1.00[EUR][1000 genomes] |
| rs6682615 | 1.00[EUR][1000 genomes] |
| rs6686370 | 1.00[EUR][1000 genomes] |
| rs6700712 | 1.00[EUR][1000 genomes] |
| rs7518601 | 1.00[EUR][1000 genomes] |
| rs7537369 | 1.00[EUR][1000 genomes] |
| rs9803675 | 1.00[EUR][1000 genomes] |
| rs9803677 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:173586000-173588800 | ZNF genes & repeats | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr1:173586400-173587200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr1:173586400-173587200 | ZNF genes & repeats | Primary Natural Killer cells fromperipheralblood | blood |
| 4 | chr1:173586400-173587200 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 5 | chr1:173586600-173587400 | ZNF genes & repeats | Cortex derived primary cultured neurospheres | brain |
