The 2.0 version of rSNPBase

Variant report

Variant rs9425722
Chromosome Location chr1:173444645-173444646
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173430800-173445000 Weak transcription Skeletal Muscle Male skeletal muscle
2 chr1:173438200-173445000 Weak transcription Primary B cells from cord blood blood
3 chr1:173440400-173444800 Weak transcription Primary B cells from peripheral blood blood
4 chr1:173440400-173444800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr1:173440400-173445200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:173440600-173445200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:173440600-173445200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:173440600-173445800 Weak transcription Spleen Spleen
9 chr1:173441000-173445000 Weak transcription H9 Cell Line embryonic stem cell
10 chr1:173441200-173445000 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr1:173441200-173445000 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr1:173441400-173445200 Weak transcription Primary hematopoietic stem cells blood
13 chr1:173441600-173445200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr1:173441800-173444800 Weak transcription H1 Cell Line embryonic stem cell
15 chr1:173441800-173444800 Enhancers Primary T helper cells PMA-I stimulated --
16 chr1:173442400-173444800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
17 chr1:173442400-173445000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:173442400-173445200 Enhancers Fetal Adrenal Gland Adrenal Gland
19 chr1:173442400-173445200 Enhancers Fetal Intestine Large intestine
20 chr1:173442400-173445200 Enhancers Fetal Intestine Small intestine
21 chr1:173442400-173445200 Enhancers Sigmoid Colon Sigmoid Colon
22 chr1:173442600-173444800 Enhancers Primary T helper 17 cells PMA-I stimulated --
23 chr1:173442600-173445000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr1:173442800-173444800 Enhancers Primary T killer naive cells fromperipheralblood blood
25 chr1:173442800-173445000 Enhancers Primary T cells fromperipheralblood blood
26 chr1:173443000-173444800 Enhancers Primary T helper cells fromperipheralblood blood
27 chr1:173443000-173444800 Enhancers Primary T regulatory cells fromperipheralblood blood
28 chr1:173443200-173445000 Weak transcription Gastric stomach
29 chr1:173443200-173445200 Weak transcription Ovary ovary
30 chr1:173443600-173444800 Weak transcription Colon Smooth Muscle Colon
31 chr1:173443600-173445000 Enhancers Primary T helper naive cells from peripheral blood blood
32 chr1:173443600-173445200 Enhancers Placenta Amnion Placenta Amnion
33 chr1:173443600-173445200 Active TSS HepG2 liver
34 chr1:173443600-173445800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
35 chr1:173443600-173447400 Active TSS HUES6 Cell Line embryonic stem cell
36 chr1:173443600-173447800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:173443800-173444800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr1:173443800-173445200 Weak transcription Aorta Aorta
39 chr1:173443800-173445200 Enhancers Esophagus oesophagus
40 chr1:173443800-173445400 Weak transcription Fetal Kidney kidney
41 chr1:173443800-173447600 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:173444000-173444800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
43 chr1:173444000-173444800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr1:173444000-173445000 Weak transcription Pancreas Pancrea
45 chr1:173444000-173445400 Flanking Active TSS Stomach Smooth Muscle stomach
46 chr1:173444000-173448000 Active TSS ES-WA7 Cell Line embryonic stem cell
47 chr1:173444200-173445000 Active TSS HUES64 Cell Line embryonic stem cell
48 chr1:173444200-173445000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
49 chr1:173444200-173445000 Enhancers Colonic Mucosa Colon
50 chr1:173444200-173445200 Enhancers Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015