Variant report

Variant	rs9425727
Chromosome Location	chr1:173458593-173458594
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:173457504..173459269-chr1:173764576..173766999,2	K562	blood:
2	chr1:173456168..173461242-chr1:173467676..173473413,6	K562	blood:
3	chr1:173457080..173459531-chr1:173825329..173828115,2	K562	blood:
4	chr1:173445279..173447565-chr1:173456877..173458938,2	MCF-7	breast:
5	chr1:173455943..173458874-chr1:173472089..173474445,2	MCF-7	breast:
6	chr1:173399963..173400909-chr1:173458192..173458927,2	MCF-7	breast:
7	chr1:173457707..173460161-chr1:173792574..173794967,2	K562	blood:
8	chr1:173454680..173459783-chr1:173793534..173797579,4	K562	blood:
9	chr1:173452597..173454697-chr1:173456877..173459634,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000120334	Chromatin interaction
ENSG00000117593	Chromatin interaction
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10732994	1.00[AMR][1000 genomes]
rs10737302	1.00[AMR][1000 genomes]
rs16846025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846055	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846090	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846099	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846125	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846129	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846173	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846204	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35581908	1.00[AMR][1000 genomes]
rs4342885	1.00[AMR][1000 genomes]
rs4354572	1.00[AMR][1000 genomes]
rs4567310	1.00[AMR][1000 genomes]
rs4636504	1.00[AMR][1000 genomes]
rs56043618	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56236728	0.87[AMR][1000 genomes]
rs59041016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60055251	0.87[AMR][1000 genomes]
rs60769229	0.87[AMR][1000 genomes]
rs6663036	0.87[AMR][1000 genomes]
rs7513591	1.00[AMR][1000 genomes]
rs7513763	1.00[AMR][1000 genomes]
rs9425410	1.00[AMR][1000 genomes]
rs9425722	1.00[AMR][1000 genomes]
rs9425725	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173448000-173477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:173448600-173459800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr1:173448800-173459400	Weak transcription	Stomach Mucosa	stomach
4	chr1:173448800-173460000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:173449000-173458600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:173449000-173458800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:173449000-173458800	Strong transcription	Fetal Intestine Large	intestine
8	chr1:173449000-173459400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:173449000-173459400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:173449200-173458800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:173449200-173459600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:173449400-173458600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:173449400-173458800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr1:173449400-173459200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:173449600-173458600	Strong transcription	Primary hematopoietic stem cells	blood
16	chr1:173449600-173458600	Strong transcription	HMEC	breast
17	chr1:173449600-173458600	Strong transcription	HUVEC	blood vessel
18	chr1:173449600-173458600	Strong transcription	NH-A	brain
19	chr1:173449600-173458600	Strong transcription	Osteobl	bone
20	chr1:173449600-173458800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:173449600-173458800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:173449600-173458800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:173449600-173458800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:173449600-173458800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr1:173449600-173459200	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr1:173449600-173459400	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr1:173449600-173459400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:173449600-173459400	Strong transcription	HSMM	muscle
29	chr1:173449600-173459600	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr1:173449600-173460000	Strong transcription	A549	lung
31	chr1:173449800-173458600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:173449800-173458800	Strong transcription	Fetal Thymus	thymus
33	chr1:173449800-173459000	Strong transcription	Fetal Muscle Leg	muscle
34	chr1:173449800-173459200	Strong transcription	Brain Hippocampus Middle	brain
35	chr1:173449800-173459400	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr1:173449800-173460000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:173450000-173458600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:173450000-173458600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:173450000-173458600	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:173450000-173459000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr1:173450000-173459200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr1:173450000-173459800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr1:173450000-173461800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr1:173450200-173458600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr1:173450200-173458600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr1:173450200-173458600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr1:173450200-173459200	Strong transcription	Brain Germinal Matrix	brain
48	chr1:173450200-173459600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr1:173450200-173459800	Strong transcription	Primary T cells from cord blood	blood
50	chr1:173450400-173458600	Strong transcription	H9 Cell Line	embryonic stem cell

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