Variant report

Variant	rs11485175
Chromosome Location	chr1:222611210-222611211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17163094	0.87[ASN][1000 genomes]
rs17163107	0.86[ASN][1000 genomes]
rs17163130	1.00[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs17163138	0.81[ASN][1000 genomes]
rs17508365	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1906272	0.91[ASN][1000 genomes]
rs28637266	0.86[ASN][1000 genomes]
rs34460044	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34513293	0.84[ASN][1000 genomes]
rs34930055	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35763770	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4846366	0.91[ASN][1000 genomes]
rs4846749	0.84[ASN][1000 genomes]
rs67339243	0.83[EUR][1000 genomes]
rs73119096	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873203	chr1:222332906-222775000	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv873204	chr1:222484745-222611210	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222609000-222612600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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