Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11485175	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11581653	0.91[EUR][1000 genomes]
rs11589561	0.91[EUR][1000 genomes]
rs11591051	0.91[EUR][1000 genomes]
rs1386580	0.91[EUR][1000 genomes]
rs17163094	0.94[ASN][1000 genomes]
rs17163107	0.93[ASN][1000 genomes]
rs17461834	0.90[EUR][1000 genomes]
rs17462264	0.91[EUR][1000 genomes]
rs17508365	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1906271	0.90[EUR][1000 genomes]
rs1906272	0.93[ASN][1000 genomes]
rs1906273	0.91[EUR][1000 genomes]
rs34930055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35052617	0.91[EUR][1000 genomes]
rs35061493	0.88[EUR][1000 genomes]
rs35077442	0.91[EUR][1000 genomes]
rs35763770	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35844598	0.91[EUR][1000 genomes]
rs4436398	0.91[EUR][1000 genomes]
rs4846366	0.93[ASN][1000 genomes]
rs4846749	0.91[ASN][1000 genomes]
rs73119096	0.93[ASN][1000 genomes]
rs765233	0.90[EUR][1000 genomes]
rs765308	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873203	chr1:222332906-222775000	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv873204	chr1:222484745-222611210	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222578800-222581000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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