Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10226881	1.00[AMR][1000 genomes]
rs10228522	0.89[ASW][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239229	1.00[AMR][1000 genomes]
rs10240076	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241399	0.89[ASW][hapmap]
rs10260770	1.00[AMR][1000 genomes]
rs10264524	1.00[AMR][1000 genomes]
rs10277710	1.00[AMR][1000 genomes]
rs10282307	1.00[AMR][1000 genomes]
rs1034804	0.89[ASW][hapmap];1.00[AMR][1000 genomes]
rs13438716	0.86[YRI][hapmap]
rs17171725	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17171735	1.00[AMR][1000 genomes]
rs17171746	1.00[AMR][1000 genomes]
rs2214846	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479858	1.00[AMR][1000 genomes]
rs28565517	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28644197	1.00[AMR][1000 genomes]
rs4492257	1.00[AMR][1000 genomes]
rs57955744	1.00[AMR][1000 genomes]
rs60699942	1.00[AMR][1000 genomes]
rs6943218	0.89[ASW][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6975971	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310219	1.00[AMR][1000 genomes]
rs7782395	1.00[AMR][1000 genomes]
rs7782411	1.00[AMR][1000 genomes]
rs7801001	0.89[ASW][hapmap];1.00[AMR][1000 genomes]
rs9886164	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40611800-40617600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:40611800-40618600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:40611800-40623400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:40611800-40626000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:40612000-40619000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:40612600-40616000	Weak transcription	Aorta	Aorta
7	chr7:40612600-40618600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:40612800-40618600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:40612800-40619000	Weak transcription	HMEC	breast
10	chr7:40612800-40624600	Weak transcription	NHLF	lung
11	chr7:40613400-40618800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:40615600-40616200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:40615800-40616200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:40615800-40616200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:40615800-40616200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: